Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16784

Metabolite ID
P16784
Deionized mass
427.0800 Da
Average m/z
428.0877
Average RT
12.3633
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
69
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

69 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.795e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)8.606e-13
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.368e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)6.536e-14
Glyma.12G186300 hypothetical protein NA 2Chr12:34717587–34719271 (+)6.896e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.794e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.977e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.064e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)3.111e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.479e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.894e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.388e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)3.584e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)1.334e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)5.534e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)1.531e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)6.459e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.187e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.925e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.934e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.934e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.934e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)2.858e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)9.253e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.145e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.139e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.089e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)9.467e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)9.467e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.173e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.173e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.334e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.546e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.48e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.893e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)8.717e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.115e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)2.041e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)2.041e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)2.041e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.569e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.595e-20
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.372e-18
Glyma.12G185900 hypothetical protein AT3G15040:AT3G15040:senescence regulator (Protein of unknown function, DUF584) 1Chr12:34674925–34675653 (+)7.541e-11
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)7.019e-12
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)6.896e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.658e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.658e-12
Glyma.12G202500 hypothetical protein AT1G03600:PSB27:photosystem II family protein 1Chr12:36301835–36304669 (+)2.25e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.22e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.795e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.724e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.685e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.045e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.163e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)6.766e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.441e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.677e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.091e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.231e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.213e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.213e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.654e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.695e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.654e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)1.654e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.299e-12
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)8.055e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.321e-11