Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08045

Metabolite ID
P08045
Deionized mass
279.1254 Da
Average m/z
280.1322
Average RT
9.6586
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)2.723e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 4Chr08:11525692–11536927 (+)3.466e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.97e-13
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)5.805e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.413e-17
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.872e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.211e-11
Glyma.02G121500 hypothetical protein NA 2Chr02:12065640–12082937 (+)3.916e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.733e-14
Glyma.08G303400 hypothetical protein NA 2Chr08:42139097–42147365 (+)1.135e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.497e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.878e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.716e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.131e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.131e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)4.201e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.041e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.736e-17
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)2.723e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)2.723e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.413e-17
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.719e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.317e-12
Glyma.01G039400 hypothetical protein AT1G10417:AT1G10417:RUN/FYVE domain protein 1Chr01:4270598–4275060 (+)1.401e-11
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)3.277e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)3.916e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.821e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.733e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.69e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.656e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.417e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.417e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.433e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.232e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.232e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.232e-13
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.15e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.83e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.246e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)9.875e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.95e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.208e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.23e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.054e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.029e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.427e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.152e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)2.058e-15
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)1.641e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.656e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.447e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)8.204e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)8.204e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.442e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.733e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.733e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.733e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.733e-14
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)6.007e-12
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)7.918e-12
Glyma.08G225300 hypothetical protein NA 1Chr08:18248653–18252894 (+)2.777e-12
Glyma.08G225400 hypothetical protein AT1G78915:AT1G78915:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:18252173–18259445 (-)2.777e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.499e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.329e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.51e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.149e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.678e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.615e-16
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.685e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)4.704e-13
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)4.704e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.869e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.793e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.742e-13
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)4.568e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)6.017e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.717e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.717e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.892e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.892e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.267e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.766e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.716e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.445e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.278e-15
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.872e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.603e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.185e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.185e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.131e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.222e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.192e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.249e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.192e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.192e-14
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)2.998e-12
Glyma.16G014200 hypothetical protein AT5G12370:SEC10:exocyst complex component sec10 1Chr16:1243163–1253803 (-)3.939e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.732e-14
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.073e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.319e-16
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.97e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.261e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)9.088e-12
Glyma.16G117300 hypothetical protein NA 1Chr16:26226934–26227350 (+)2.871e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.702e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.705e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.824e-17
Glyma.16G120600 hypothetical protein AT5G11980:AT5G11980:conserved oligomeric Golgi complex component-related / COG complex component-like protein 1Chr16:26851941–26857783 (-)9.564e-11
Glyma.16G122000 hypothetical protein NA 1Chr16:27060846–27062835 (-)9.564e-11
Glyma.16G122200 hypothetical protein AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr16:27104326–27110822 (-)9.564e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.697e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.772e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.001e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.001e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.553e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.17e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.974e-14
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.041e-11
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)2.723e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)2.723e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)2.723e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)2.437e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.211e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)2.704e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.694e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)9.889e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.406e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)2.664e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)1.958e-11