Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54014

Metabolite ID
P54014
Deionized mass
415.2716 Da
Average m/z
416.2775
Average RT
30.5383
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.299e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.354e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.072e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.215e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.256e-13
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)1.175e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.187e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.169e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.14e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.879e-15
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.016e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.354e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.158e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)7.512e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.662e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.454e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)7.337e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)7.337e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)7.337e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)7.337e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)7.337e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)7.337e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)7.337e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.856e-13
Glyma.03G008300 hypothetical protein AT4G00400:GPAT8:glycerol-3-phosphate acyltransferase 8 1Chr03:801855–806650 (-)3.533e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.544e-13
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)1.446e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.671e-13
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)5.012e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.763e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)1.175e-11
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)1.175e-11
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)1.175e-11
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)1.175e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.472e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.936e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.936e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.086e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.076e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.076e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.076e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.209e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.128e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.682e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.812e-17
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)7.568e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.995e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.995e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.187e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.187e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.187e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.187e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.483e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.687e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.687e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.664e-16
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.945e-15
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.557e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.197e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.277e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.277e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.277e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.277e-15
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.075e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.767e-13
Glyma.12G007800 hypothetical protein NA 1Chr12:572469–583974 (+)8.886e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.536e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.536e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.169e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.82e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.65e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.746e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.848e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.848e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.848e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)2.542e-12
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.072e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.284e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.14e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.438e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.438e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)2.794e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.752e-12
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)2.199e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)1.56e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.429e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.271e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.016e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.603e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.721e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.31e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)9.932e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.361e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.483e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.215e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.345e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.345e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.806e-12
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)1.459e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)2.757e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)4.066e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)5.901e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.097e-13
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)2.408e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.724e-14
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)1.015e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)4.45e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)4.45e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)4.45e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)7.321e-13
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)1.719e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)2.249e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.916e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.225e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.79e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.029e-12