Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52488

Metabolite ID
P52488
Deionized mass
490.0985 Da
Average m/z
491.1080
Average RT
28.6190
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029800 hypothetical protein NA 5Chr19:3724518–3729860 (-)1.02e-21
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.183e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.483e-15
Glyma.19G029600 hypothetical protein NA 4Chr19:3681517–3690884 (-)7.119e-23
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.712e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.556e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)5.119e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.431e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.459e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)1.401e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.963e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.963e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.963e-16
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.347e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.869e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.483e-15
Glyma.01G154500 hypothetical protein AT1G31780:AT1G31780:oligomeric golgi complex subunit 1Chr01:49196540–49201707 (+)3.296e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.873e-12
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)4.223e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.552e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.222e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.035e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.848e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.945e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.945e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.945e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.481e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.341e-15
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)8.498e-14
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.739e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.98e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.256e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.128e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.579e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.752e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.856e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.856e-13
Glyma.06G203800 hypothetical protein NA 1Chr06:19090082–19094822 (-)3.027e-12
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)2.829e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)2.829e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)2.829e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)2.829e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)2.829e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)2.829e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)2.829e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)2.829e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)2.829e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)2.829e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)2.425e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)2.425e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)2.425e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)3.446e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.219e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.045e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.219e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.219e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.045e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)8.528e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.641e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.441e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.97e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)4.908e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.908e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.865e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.963e-16
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.337e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.963e-16
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)7.578e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)7.578e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.129e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.26e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.367e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.756e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.663e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.176e-17
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.176e-17
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)3.632e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.176e-17
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.176e-17
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)3.693e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.55e-13
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)3.693e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.574e-15
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)4.749e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.148e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.775e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.775e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.775e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.775e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.858e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)8.901e-13
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)8.901e-13
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)8.901e-13
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)8.901e-13
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)8.901e-13
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)8.901e-13
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)8.901e-13
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)8.901e-13
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)8.901e-13
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)8.901e-13
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)8.901e-13
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)8.901e-13
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)8.901e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.186e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.186e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.833e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.98e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.318e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.98e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.98e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.169e-11
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)8.185e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.017e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.123e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.323e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)5.059e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.869e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.532e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.712e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.712e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.712e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.712e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)7.563e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.364e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.556e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.556e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.274e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.029e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.132e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.7e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.259e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.132e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.431e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.901e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.901e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)3.959e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.196e-12
Glyma.19G029500 hypothetical protein NA 1Chr19:3669589–3673886 (-)8.495e-13
Glyma.19G029900 hypothetical protein NA 1Chr19:3729213–3729434 (+)8.495e-13
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)1.66e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)1.66e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)2.568e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)2.025e-14