Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50234

Metabolite ID
P50234
Deionized mass
611.2407 Da
Average m/z
612.2490
Average RT
26.7353
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)3.573e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.499e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.971e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)1.141e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.829e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.829e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.829e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.717e-16
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.504e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.822e-17
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)4.694e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.499e-16
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.296e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.407e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.093e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.093e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.259e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.672e-13
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)5.239e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5.652e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5.652e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5.652e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.248e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.988e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.988e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.988e-12
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)1.049e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.568e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.218e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.937e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.16e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.16e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.16e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.136e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.702e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.702e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.65e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.02e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.677e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.971e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.971e-11
Glyma.08G105500 hypothetical protein AT1G24260:SEP3:K-box region and MADS-box transcription factor family protein 1Chr08:8128245–8135906 (-)9.657e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.019e-11
Glyma.08G350900 hypothetical protein AT3G25030:AT3G25030:RING/U-box superfamily protein__AT3G07120:AT3G07120:RING/U-box superfamily protein 1Chr08:46461098–46464368 (+)9.063e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.676e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.099e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.89e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.091e-13
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.384e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.051e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.305e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.305e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.64e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.961e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)2.532e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)5.226e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.093e-15
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.829e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.829e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.829e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.829e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.829e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.106e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.245e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.868e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.868e-12
Glyma.10G038400 hypothetical protein NA 1Chr10:3400759–3409406 (+)4.277e-11
Glyma.10G055100 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr10:5015329–5032990 (+)2.62e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.218e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.218e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.218e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.218e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.921e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.666e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.725e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.058e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)2.411e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.181e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.407e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.407e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.407e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.249e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.25e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.526e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.395e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.822e-17
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.791e-15
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.451e-13
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)8.058e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.803e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.803e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.803e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.025e-15
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)9.544e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.052e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.052e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.052e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.008e-13
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)5.859e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.087e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.039e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.275e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.292e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.332e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.614e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)1.557e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)3.457e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.742e-11
Glyma.19G004700 Protein RST1 AT3G27670:RST1:ARM repeat superfamily protein 1Chr19:379721–392669 (-)9.165e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.977e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.976e-18
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)2.669e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)8.571e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)8.571e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.544e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.055e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.617e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.432e-13
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.041e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)8.971e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)6.133e-11