Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47606

Metabolite ID
P47606
Deionized mass
578.3730 Da
Average m/z
579.3821
Average RT
24.8598
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.907e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.383e-13
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)2.601e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.702e-12
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.013e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.833e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.404e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.404e-13
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.396e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.751e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.751e-13
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)2.477e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.442e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.973e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)6.163e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)6.011e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.295e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.812e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.295e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.295e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.812e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)1.983e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.964e-13
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)7.093e-13
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.813e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)7.448e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.353e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.915e-12
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)1.767e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.326e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.21e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.383e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.413e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.413e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.413e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.237e-12
Glyma.15G069700 hypothetical protein AT1G11120:AT1G11120:CTTNBP 2 amino-terminal-like protein 1Chr15:5327863–5332137 (-)2.338e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.536e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.5e-14
Glyma.15G140900 hypothetical protein AT3G66658:ALDH22A1:aldehyde dehydrogenase 22A1 1Chr15:11538070–11545857 (-)1.31e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.46e-13
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.307e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.637e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.061e-14
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.061e-14
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.061e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.972e-12
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)1.702e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.612e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)5.819e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)3.503e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.346e-11