Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46620

Metabolite ID
P46620
Deionized mass
755.4411 Da
Average m/z
756.4479
Average RT
24.2338
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)3.553e-11
Glyma.03G021000 hypothetical protein NA 2Chr03:2148298–2162954 (-)3.553e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)5.083e-11
Glyma.06G276200 hypothetical protein NA 2Chr06:46728794–46731595 (-)2.58e-12
Glyma.06G276300 hypothetical protein NA 2Chr06:46741410–46744086 (-)2.177e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.391e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)5.86e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.466e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.27e-11
Glyma.03G020400 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2 1Chr03:2078755–2084370 (+)3.905e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)1.755e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.474e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.314e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.42e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.233e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.233e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.496e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.393e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)4.523e-12
Glyma.06G277400 hypothetical protein AT2G42610:LSH10:LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 1Chr06:46861811–46865639 (-)7.14e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.495e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.495e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.495e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.267e-14
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)4.928e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.019e-14
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)3.498e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)8.353e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.323e-12
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.556e-12
Glyma.14G012900 hypothetical protein NA 1Chr14:971984–978686 (+)8.016e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.028e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.028e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.028e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.534e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.391e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)1.56e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.561e-12
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)8.829e-12