Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45429

Metabolite ID
P45429
Deionized mass
631.2839 Da
Average m/z
632.2928
Average RT
23.3590
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
133
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

133 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.836e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.198e-14
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)8.05e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.452e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)3.437e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.606e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.678e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)2.569e-14
Glyma.12G186300 hypothetical protein NA 2Chr12:34717587–34719271 (+)5.805e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.756e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.562e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.474e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.474e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)1.908e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)2.843e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.59e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.647e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.835e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.211e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.575e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.817e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.967e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.304e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)3.234e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.154e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.295e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.49e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)7.341e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.814e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.782e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.409e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.409e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.627e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.356e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.356e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.356e-14
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.395e-15
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.927e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.59e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.59e-14
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.839e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.157e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.839e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.839e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.157e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)4.83e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)4.83e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.198e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.198e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.735e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.031e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.606e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.606e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.606e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.606e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)8.051e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)8.051e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.577e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.341e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.716e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.228e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.758e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.255e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)4.066e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.339e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.16e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.132e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.272e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)9.751e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)9.75e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.354e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.353e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.909e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.909e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.979e-15
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.37e-11
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)1.794e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)9.746e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.12e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.12e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.791e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.955e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.562e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.791e-12
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)5.093e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.367e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.326e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.326e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.474e-11
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)1.306e-13
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)8.669e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.302e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)9.789e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.174e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.127e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.174e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.174e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.998e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.702e-12
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)3.696e-11
Glyma.15G152400 hypothetical protein NA 1Chr15:12641790–12646649 (+)3.696e-11
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)3.696e-11
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)2.612e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.096e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.826e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.43e-14
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)2.683e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.645e-12
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)5.879e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)5.879e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.998e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)4.95e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.383e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.579e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.003e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.579e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.901e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)4.221e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.238e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)3.059e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.452e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.57e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.57e-14
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.514e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.536e-15
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.647e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)9.356e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)9.104e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)9.356e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)9.356e-11
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)1.384e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.026e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.554e-14