Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42913

Metabolite ID
P42913
Deionized mass
1036.5457 Da
Average m/z
1037.5499
Average RT
21.7123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)7.172e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.982e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)2.257e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.905e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.982e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.677e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.626e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.626e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.626e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.224e-11
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)1.093e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)2.257e-12
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)6.994e-11
Glyma.16G115500 hypothetical protein NA 2Chr16:25622503–25630816 (+)1.905e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)1.982e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.831e-15
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 2Chr16:36943073–36948828 (+)4.183e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.973e-11
Glyma.01G222700 hypothetical protein AT1G64060:RBOH F:respiratory burst oxidase protein F 1Chr01:55163018–55172994 (+)2.703e-12
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.862e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.38e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.53e-12
Glyma.02G289000 hypothetical protein AT5G54800:GPT1:glucose 6-phosphate/phosphate translocator 1 1Chr02:46898427–46902989 (+)1.134e-11
Glyma.02G305900 hypothetical protein AT5G35750:HK2:histidine kinase 2 1Chr02:48055694–48067169 (+)9.302e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.357e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.669e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.996e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.178e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.505e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.822e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.781e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.781e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.662e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.409e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.408e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.409e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.631e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.221e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.097e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.863e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.863e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.456e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.695e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.456e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.456e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.695e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.414e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.526e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)4.958e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)4.958e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.602e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.971e-12
Glyma.08G220200 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr08:17889781–17898867 (+)8.294e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.713e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.573e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.716e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.626e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.626e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.626e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.617e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.626e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.626e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.549e-13
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)1.591e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)1.591e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.135e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.127e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.127e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.127e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.127e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)1.021e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.257e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.965e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.261e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.966e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.966e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.75e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.172e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.897e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.905e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.905e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.905e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.242e-12
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)6.625e-11
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)1.784e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.631e-15
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.982e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.982e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.143e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.751e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)4.808e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.792e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.211e-13