Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42339

Metabolite ID
P42339
Deionized mass
843.4977 Da
Average m/z
844.5010
Average RT
21.3444
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)1.319e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 2Chr16:21495147–21497932 (+)2.265e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.439e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.439e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)1.186e-12
Glyma.17G215200 hypothetical protein NA 2Chr17:36125880–36142936 (+)2.068e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)7.687e-11
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)8.584e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.269e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.136e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.691e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.284e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.306e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.682e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.343e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.763e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)3.787e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.348e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.737e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.417e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.219e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)8.758e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.169e-12
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)1.223e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.838e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.838e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.838e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.838e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.638e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.754e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)2.317e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)2.317e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)2.317e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.475e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.897e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.478e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.642e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.118e-12
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.118e-12
Glyma.16G105900 hypothetical protein NA 1Chr16:21413295–21415501 (+)2.863e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.118e-12
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)9.356e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.926e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)1.995e-13
Glyma.17G212100 hypothetical protein NA 1Chr17:35010757–35014587 (+)2.068e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.068e-11
Glyma.17G213300 hypothetical protein NA 1Chr17:35589559–35592664 (+)2.068e-11
Glyma.17G213600 hypothetical protein AT4G32060:AT4G32060:calcium-binding EF hand family protein 1Chr17:35740625–35746554 (-)2.068e-11
Glyma.17G213700 hypothetical protein AT5G11090:AT5G11090:serine-rich protein-like protein 1Chr17:35767502–35768989 (-)2.068e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)2.068e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.068e-11