Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41977

Metabolite ID
P41977
Deionized mass
738.9408 Da
Average m/z
739.9492
Average RT
21.0735
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)9.697e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.945e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.406e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.014e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.251e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.893e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.744e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.421e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.945e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.005e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.865e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.306e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.996e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.996e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.93e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.442e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.442e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.442e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.431e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.295e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.715e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.469e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.469e-13
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)6.284e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)6.284e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.497e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.251e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.251e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.251e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.251e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.527e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.527e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.94e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.573e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.761e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.523e-14
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.497e-11
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)1.522e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)1.522e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.08e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)5.436e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)5.437e-11
Glyma.11G020900 hypothetical protein NA 1Chr11:1482644–1490708 (+)6.124e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)8.814e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.284e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.284e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.348e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.858e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.521e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.521e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.912e-11
Glyma.13G067200 hypothetical protein NA 1Chr13:16688567–16689544 (-)1.943e-13
Glyma.13G067500 hypothetical protein NA 1Chr13:16729033–16733978 (+)7.604e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.656e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.137e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.746e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.137e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.137e-12
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)3.636e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.138e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.697e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.973e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.828e-14
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.097e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.406e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.406e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.406e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.406e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.979e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.155e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.805e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.121e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.624e-14
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)9.538e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.592e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)6.392e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.877e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.895e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.895e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.383e-13