Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41961

Metabolite ID
P41961
Deionized mass
1052.5412 Da
Average m/z
1053.5518
Average RT
21.0694
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.258e-11
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)1.063e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.027e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.154e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)8.783e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 3Chr18:55076548–55086297 (+)1.776e-13
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 2Chr06:14104416–14111842 (+)5.853e-15
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.144e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.527e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.377e-11
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)4.721e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.044e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.889e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.378e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.17e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.679e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.258e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.683e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.019e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)4.529e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.939e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.685e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.281e-13
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)8.606e-13
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)2.176e-12
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)2.176e-12
Glyma.03G154000 hypothetical protein NA 1Chr03:36898114–36903520 (-)2.932e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.559e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.891e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.23e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.231e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.23e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.948e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)8.007e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.193e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.805e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.531e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.068e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.068e-13
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)6.163e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.908e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.965e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.908e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.908e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.965e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.046e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.097e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.912e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.527e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.527e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.527e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.527e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.734e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.396e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.396e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.205e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.892e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)8.036e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.927e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.927e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.077e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.378e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.872e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.024e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.074e-19
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.17e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.106e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.521e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.106e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.106e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)1.063e-12
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)1.063e-12
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)5.636e-11
Glyma.15G262100 hypothetical protein AT1G79550:PGK:phosphoglycerate kinase 1Chr15:49447943–49451741 (+)2.714e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.679e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.456e-14
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.548e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.027e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.027e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.027e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.027e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.205e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.466e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.154e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.294e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.294e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.508e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.508e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.507e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)8.047e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)1.46e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.033e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.843e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.093e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.094e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.226e-12