Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41800

Metabolite ID
P41800
Deionized mass
520.3342 Da
Average m/z
521.3434
Average RT
20.9545
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)5.976e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.182e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.512e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)1.328e-14
Glyma.12G186300 hypothetical protein NA 2Chr12:34717587–34719271 (+)2.847e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.584e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.756e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.756e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.641e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.035e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.322e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)5.356e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.267e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.058e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.182e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.287e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.817e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)3.483e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.534e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.928e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.167e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.423e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.885e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.301e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.021e-11
Glyma.03G173600 hypothetical protein AT3G53570:FC1:serine/threonine-protein kinase AFC1 1Chr03:38756369–38760896 (+)7.964e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.802e-13
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.874e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.498e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.441e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.072e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.184e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.184e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.871e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.871e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.512e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.512e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.021e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)5.849e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.906e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)4.279e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.991e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.975e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.785e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)1.17e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.113e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.04e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.408e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.279e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.128e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.805e-14
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)1.45e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)2.847e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.349e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.349e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.192e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.607e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.753e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.584e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.002e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.002e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.756e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.827e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)2.134e-12
Glyma.13G164300 hypothetical protein NA 1Chr13:27934139–27936052 (-)1.203e-11
Glyma.13G169900 hypothetical protein AT3G01470:HB-1:homeobox 1 1Chr13:28397652–28401084 (+)4.002e-11
Glyma.13G170000 hypothetical protein AT3G01460:MBD9:methyl-CPG-binding domain 9 1Chr13:28401415–28416198 (-)1.164e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.929e-16
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.567e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.336e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)7.111e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)7.111e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)8.448e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.035e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.326e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.921e-12
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)7.843e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.63e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)8.305e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.976e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.976e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.976e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.976e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)7.847e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.19e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.159e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.516e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.671e-15
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.346e-13
Glyma.18G079000 hypothetical protein NA 1Chr18:7595306–7600287 (-)4.373e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)7.307e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.513e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.576e-11
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)6.027e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)2.665e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)8.225e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.799e-11