Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38229

Metabolite ID
P38229
Deionized mass
711.8357 Da
Average m/z
712.8391
Average RT
18.9256
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
89
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

89 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)9.299e-18
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.47e-11
Glyma.03G135200 hypothetical protein NA 2Chr03:35070964–35078620 (+)2.397e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.597e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.597e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.597e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.555e-14
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)3.555e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.133e-14
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 2Chr18:51650951–51654636 (-)2.677e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)8.883e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)9.299e-18
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.751e-15
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.751e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.47e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.338e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.279e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.745e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)5.775e-15
Glyma.03G013800 hypothetical protein NA 1Chr03:1395128–1397169 (+)1.694e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.234e-11
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)6.862e-11
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)2.397e-11
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)6.506e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.689e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.565e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)5.517e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.132e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.241e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.128e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.071e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.917e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.166e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.166e-13
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)6.63e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.291e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.305e-12
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)3.363e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)5.275e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)5.275e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.47e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)2.138e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.025e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)2.576e-13
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)2.437e-11
Glyma.08G227900 hypothetical protein NA 1Chr08:18551920–18567339 (-)4.874e-11
Glyma.08G342600 hypothetical protein NA 1Chr08:45812451–45820040 (+)3.267e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.877e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.439e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.073e-16
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)1.139e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)2.352e-11
Glyma.09G225500 hypothetical protein NA 1Chr09:45028906–45036622 (+)9.789e-11
Glyma.09G267000 hypothetical protein AT3G18030:HAL3A:HAL3-like protein A 1Chr09:48464679–48466185 (-)5.962e-11
Glyma.09G267300 hypothetical protein NA 1Chr09:48521356–48524570 (-)5.962e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.43e-11
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)2.447e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.011e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.597e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.597e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.597e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.025e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.597e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.597e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.054e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.275e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.275e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.46e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)7.607e-11
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.145e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)5.025e-11
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)3.365e-11
Glyma.12G186300 hypothetical protein NA 1Chr12:34717587–34719271 (+)3.337e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)3.337e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.243e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.141e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.878e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.029e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)8.444e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.964e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)2.262e-11
Glyma.18G184200 hypothetical protein NA 1Chr18:44364673–44366631 (-)8.62e-11
Glyma.18G213700 hypothetical protein NA 1Chr18:50068173–50075808 (-)2.048e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.751e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.565e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.543e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.658e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.675e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.374e-11