Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29891

Metabolite ID
P29891
Deionized mass
634.3999 Da
Average m/z
635.4102
Average RT
15.8980
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.242e-13
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)1.744e-11
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.146e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.27e-17
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.986e-11
Glyma.16G178800 hypothetical protein NA 3Chr16:33950003–33953968 (-)3.649e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)1.077e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.382e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.154e-13
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)4.181e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)3.38e-14
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)9.041e-14
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.173e-15
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.433e-16
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 2Chr08:9169843–9172229 (-)1.187e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.755e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.181e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 2Chr16:33954446–33960344 (+)8.552e-15
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.003e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.034e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.102e-22
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.102e-22
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.686e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)7.261e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)7.261e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.307e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.665e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.073e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.327e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.248e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)7.807e-14
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)7.807e-14
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)7.807e-14
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)7.807e-14
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)7.807e-14
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)7.807e-14
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)7.807e-14
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.154e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)3.36e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.401e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.401e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.08e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.635e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.99e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)6.208e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.126e-11
Glyma.03G245100 hypothetical protein AT1G54500:AT1G54500:Rubredoxin-like superfamily protein 1Chr03:44246906–44248269 (-)9.713e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)4.181e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.563e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.389e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.207e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.756e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.107e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.927e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.745e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.644e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.635e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.389e-14
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)1.136e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)7.59e-13
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.377e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)4.669e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.219e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.718e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.173e-15
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)1.718e-12
Glyma.08G118900 hypothetical protein NA 1Chr08:9180535–9184036 (+)4.851e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)8.289e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.339e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)1.567e-11
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)2.997e-12
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)1.301e-11
Glyma.08G171900 hypothetical protein AT3G12950:AT3G12950:Trypsin family protein 1Chr08:13688931–13694431 (+)2.629e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.882e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.732e-19
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.853e-18
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)3.801e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.43e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.795e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)1.788e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.209e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.209e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.002e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.002e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.343e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.037e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.05e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.656e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.181e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.257e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.236e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.257e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.257e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.921e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.196e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.299e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.428e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.206e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.054e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.079e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.012e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.518e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.741e-14
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)7.606e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)4.639e-12
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)9.52e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)8.552e-15
Glyma.16G179000 hypothetical protein NA 1Chr16:33962757–33966062 (-)8.745e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)8.552e-15
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.996e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.977e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.094e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.094e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)6.035e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)1.546e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.97e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.658e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.26e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.003e-15
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.704e-12
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)6.191e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.558e-13
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)9.405e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.317e-12