Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27704

Metabolite ID
P27704
Deionized mass
519.1794 Da
Average m/z
520.1871
Average RT
15.2864
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
83
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

83 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.711e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.237e-13
Glyma.02G121500 hypothetical protein NA 2Chr02:12065640–12082937 (+)5.911e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.045e-12
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)6.023e-14
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.165e-14
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.092e-16
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 2Chr08:9169843–9172229 (-)3.485e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.429e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.055e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.315e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.237e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.954e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.865e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.47e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.565e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.606e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)5.911e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.968e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.925e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.335e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.749e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.346e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.369e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.116e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.958e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.127e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.929e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.736e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.165e-14
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)4.893e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.138e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.429e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.429e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.429e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.429e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.365e-11
Glyma.09G168700 hypothetical protein AT3G17690:CNGC19:cyclic nucleotide gated channel 19 1Chr09:39338715–39352099 (-)7.721e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)6.515e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)9.839e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.472e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.472e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.507e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.495e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.495e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.494e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.494e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.235e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.979e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.863e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.601e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.521e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.521e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.521e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.521e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.864e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.864e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.864e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.997e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.746e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.746e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.746e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.473e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.216e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.548e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.055e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.782e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.651e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)4.887e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.039e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.223e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.612e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.957e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.613e-12
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)6.856e-12
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)4.989e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)4.989e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)4.989e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.371e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)1.777e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.714e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.714e-14