Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26553

Metabolite ID
P26553
Deionized mass
473.2195 Da
Average m/z
474.2258
Average RT
15.0054
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)1.586e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.812e-13
Glyma.08G147300 hypothetical protein NA 3Chr08:11238871–11242682 (+)1.506e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)1.239e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)5.696e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.696e-12
Glyma.08G149500 hypothetical protein NA 2Chr08:11460264–11465243 (-)5.518e-14
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)9.552e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.328e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.812e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.148e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.987e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.089e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.519e-15
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)5.866e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)5.718e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)6.623e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.221e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.308e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.093e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.093e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.104e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.002e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.002e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.002e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.023e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.313e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.191e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.491e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.135e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.91e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.91e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.91e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.189e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.189e-13
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.827e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.696e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.696e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.579e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.696e-12
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 1Chr08:11083230–11086950 (-)4.517e-11
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)4.517e-11
Glyma.08G146100 hypothetical protein NA 1Chr08:11119305–11124078 (+)7.763e-12
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)2.968e-12
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)4.639e-12
Glyma.08G148700 hypothetical protein NA 1Chr08:11384601–11387727 (-)2.68e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)8.129e-15
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.174e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.093e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.093e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.53e-15
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.964e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.133e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.537e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.309e-11
Glyma.09G168700 hypothetical protein AT3G17690:CNGC19:cyclic nucleotide gated channel 19 1Chr09:39338715–39352099 (-)5.16e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)8.684e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.861e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.861e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.861e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.861e-12
Glyma.11G223400 hypothetical protein NA 1Chr11:31842750–31844002 (-)9.598e-11
Glyma.11G224000 hypothetical protein NA 1Chr11:31892279–31894201 (-)2.307e-11
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)6.712e-12
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)2.448e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.362e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.362e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.362e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.448e-13
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)1.04e-12
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)8.976e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.725e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.048e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.725e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.725e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.532e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)3.192e-11
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)1.125e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.328e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)7.966e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.585e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.586e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.586e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.586e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.247e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.277e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.745e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.212e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.667e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.064e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.319e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.319e-12
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)3.652e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)1.744e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.265e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.532e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)9.777e-12