Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P26288

Metabolite ID
P26288
Deionized mass
539.2216 Da
Average m/z
540.2293
Average RT
14.9302
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
90
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

90 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.302e-14
Glyma.07G136900 hypothetical protein NA 3Chr07:16234861–16240776 (+)2.372e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.197e-14
Glyma.12G186300 hypothetical protein NA 2Chr12:34717587–34719271 (+)3.277e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.359e-16
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.798e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.276e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.086e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.079e-13
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.745e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)3.416e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.666e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)5.418e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)2.533e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.348e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.79e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.166e-12
Glyma.03G073300 hypothetical protein AT1G79210:AT1G79210:N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 1Chr03:17770362–17785644 (+)8.233e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.326e-12
Glyma.04G107900 hypothetical protein AT3G53990:AT3G53990:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr04:11421366–11422972 (-)5.018e-11
Glyma.04G220200 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr04:49075208–49089579 (+)5.919e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)2.903e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)8.865e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.04e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.222e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.207e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.207e-11
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)6.578e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.29e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.067e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)6.422e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.325e-11
Glyma.07G033200 hypothetical protein AT1G52770:AT1G52770:Phototropic-responsive NPH3 family protein 1Chr07:2603812–2606511 (+)9.754e-12
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)7.809e-12
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)7.809e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.167e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.167e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)1.201e-11
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)3.39e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.086e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)5.122e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.946e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.642e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.038e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)7.013e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.761e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.138e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.223e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.217e-12
Glyma.12G185900 hypothetical protein AT3G15040:AT3G15040:senescence regulator (Protein of unknown function, DUF584) 1Chr12:34674925–34675653 (+)7.516e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)5.788e-13
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)5.643e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.652e-13
Glyma.13G103200 hypothetical protein AT5G20600:AT5G20600:ribosomal RNA processing-like protein 1Chr13:21822387–21825567 (-)3.633e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.197e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.317e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.215e-14
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.215e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.215e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.15e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.224e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.005e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.199e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.651e-13
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)9.123e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)7.616e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.4e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.358e-13
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.204e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.903e-12
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)1.772e-13
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)6.587e-12
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)6.587e-12
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 1Chr16:3964264–3976083 (-)3.657e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)1.916e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)7.337e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.508e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.911e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.455e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.037e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.783e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.048e-11
Glyma.18G079000 hypothetical protein NA 1Chr18:7595306–7600287 (-)5.304e-11
Glyma.18G110500 hypothetical protein NA 1Chr18:13060060–13070455 (+)9.273e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.48e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.314e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.665e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.664e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.875e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.708e-11