Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24594

Metabolite ID
P24594
Deionized mass
625.3279 Da
Average m/z
626.3386
Average RT
14.4651
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.424e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.119e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.067e-12
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 3Chr08:14738283–14742033 (+)5.077e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.423e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.306e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.768e-12
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)7.902e-11
Glyma.08G184300 hypothetical protein NA 2Chr08:14784345–14786953 (+)2.391e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)1.001e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.423e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.915e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.567e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.014e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.119e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.267e-11
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)2.214e-14
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.866e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.424e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.355e-16
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.457e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.072e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.362e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.362e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.943e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.327e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.327e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.327e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.709e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.016e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.223e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.177e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.317e-21
Glyma.05G239000 hypothetical protein NA 1Chr05:41489721–41491777 (+)1.32e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.358e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.359e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.358e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.906e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.906e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)9.568e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.285e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.067e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.067e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.087e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.03e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.599e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.793e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.187e-13
Glyma.08G183800 hypothetical protein NA 1Chr08:14744295–14744525 (+)6.9e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)1.102e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.19e-15
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)4.858e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)5.293e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.424e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.059e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.13e-15
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)5.746e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.18e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.435e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.034e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.034e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.034e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.034e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.489e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.102e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.072e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)2.713e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)4.988e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.331e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.331e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)3.86e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.86e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.697e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.647e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.06e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.496e-18
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.334e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.329e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.424e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.666e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.562e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.721e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.423e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.423e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.975e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.435e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.157e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.432e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.059e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.03e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.963e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.306e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.811e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.812e-13
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)9.809e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.961e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)7.75e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.825e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.768e-12
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)1.323e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.369e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.502e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.583e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.583e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.224e-11