Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24073

Metabolite ID
P24073
Deionized mass
352.1238 Da
Average m/z
353.1320
Average RT
14.3056
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.733e-12
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.568e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)3.774e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)7.768e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)6.104e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.805e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.746e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.361e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.821e-13
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.091e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.708e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.626e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.098e-12
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)1.703e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.272e-11
Glyma.05G219800 TRE1 trehalase 1 AT4G24040:TRE1:trehalase 1 1Chr05:39920183–39925215 (+)7.174e-13
Glyma.05G220100 hypothetical protein AT1G33170:AT1G33170:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:39950499–39956022 (+)7.174e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.425e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.039e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.103e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.565e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.565e-12
Glyma.07G094200 hypothetical protein NA 1Chr07:8792240–8797837 (+)1.222e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.736e-14
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)7.028e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.774e-13
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)2.798e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.805e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.805e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.805e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.591e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.591e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.319e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.146e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.146e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.162e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.162e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.162e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.162e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.06e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.014e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)8.926e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.309e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.309e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.309e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.254e-11
Glyma.15G262200 hypothetical protein AT3G12760:AT3G12760:defective in cullin neddylation protein 1Chr15:49465185–49472595 (-)8.897e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.746e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.854e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.714e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.521e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.521e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.333e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.333e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.918e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.937e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.777e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)3.347e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)1.171e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)9.915e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.105e-11