Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13553

Metabolite ID
P13553
Deionized mass
593.1699 Da
Average m/z
594.1781
Average RT
11.4791
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.877e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.826e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.304e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.845e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.765e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.877e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.827e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.791e-12
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 2Chr20:35468911–35474203 (+)7.259e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.49e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.514e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.142e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.517e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.261e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.261e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.261e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.366e-11
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.741e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.074e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.074e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.074e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.279e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.753e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)4.221e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.147e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.518e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)7.787e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.096e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.98e-11
Glyma.12G007800 hypothetical protein NA 1Chr12:572469–583974 (+)2.063e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.762e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.762e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)7.891e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.416e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.416e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.422e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.665e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.484e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.484e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.5e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)8.045e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)8.347e-16
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)1.998e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.765e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.826e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.826e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.826e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.826e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.466e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.067e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.174e-14
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)3.514e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)1.91e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)6.645e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.344e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.344e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)5.199e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)2.825e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)7.697e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.403e-11