Overview Annotation GWAS Evidence Associated genes

P12066

Metabolite ID
P12066
Deionized mass
474.2105 Da
Average m/z
475.2149
Average RT
10.9714
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
156
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

156 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.487e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)7.384e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.173e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)2.392e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.617e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.043e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)3.135e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.851e-11
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)6.957e-13
Glyma.09G060000 hypothetical protein NA 2Chr09:5548206–5554279 (-)2.905e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)1.188e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.242e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)5.504e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.691e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.691e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.657e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)6.342e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.632e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)7.34e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.173e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.72e-13
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)9.751e-12
Glyma.01G047100 hypothetical protein AT1G14250:AT1G14250:GDA1/CD39 nucleoside phosphatase family protein__AT1G14230:AT1G14230:GDA1/CD39 nucleoside phosphata… 1Chr01:5503526–5511806 (+)9.405e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.17e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.805e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.126e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.126e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.126e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.126e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.126e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.126e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.126e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.586e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.586e-11
Glyma.02G109200 hypothetical protein AT1G14180:AT1G14180:RING/U-box superfamily protein 1Chr02:10483830–10487258 (-)3.041e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.359e-16
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.017e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.516e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.273e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)3.346e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.389e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.759e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.076e-12
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)2.398e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.581e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.021e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)7.592e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.096e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.534e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.252e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.252e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.079e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.243e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.243e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.243e-16
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.682e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.859e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.934e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.308e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.304e-15
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)5.958e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)5.958e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)5.958e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.735e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.735e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.734e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.244e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.244e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.26e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.044e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.044e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.583e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.298e-15
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)9.851e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)9.851e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.477e-14
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)5.044e-14
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)5.044e-14
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)2.74e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)1.698e-13
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)1.698e-13
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 1Chr09:5561072–5570789 (+)2.905e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.283e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)8.488e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.768e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)5.852e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)3.646e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.409e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.17e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.01e-15
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)5.365e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)1.158e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.71e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.71e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.71e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.71e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.473e-13
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.048e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.021e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.021e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.021e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.055e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.055e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.986e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.986e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.039e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.039e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.517e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.691e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.691e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.995e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.5e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.946e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.946e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.946e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.482e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.412e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.491e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.808e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.169e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.66e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.439e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.44e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.44e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.732e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.989e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.792e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)7.832e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)5.843e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.591e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.314e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.333e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.698e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.219e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.154e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.483e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)6.387e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.725e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.406e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.859e-12
Glyma.19G002200 hypothetical protein NA 1Chr19:144515–146552 (+)4.915e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)3.644e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)9.798e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.632e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.284e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.284e-14
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)8.649e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.379e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.448e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)6.632e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.588e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.903e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.223e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.253e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.103e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.526e-11