Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11240

Metabolite ID
P11240
Deionized mass
225.1038 Da
Average m/z
226.1090
Average RT
10.7208
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 4Chr03:2240686–2246512 (-)8.24e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.124e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.064e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.372e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.797e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)3.884e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)8.796e-13
Glyma.03G022900 hypothetical protein NA 2Chr03:2409690–2420328 (-)8.253e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.603e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.835e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.447e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.144e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.657e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)3.825e-13
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)3.825e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.064e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.953e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.093e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.903e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.202e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.092e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)6.74e-13
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.202e-13
Glyma.03G021000 hypothetical protein NA 1Chr03:2148298–2162954 (-)6.026e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)8.049e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.414e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.284e-16
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)8.783e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.287e-11
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)1.489e-11
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)8.792e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.057e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.923e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.084e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)5.626e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.399e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.812e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.812e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.812e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.1e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.702e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.254e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.55e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.986e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.203e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.203e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.098e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.068e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.759e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.307e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.759e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.759e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.308e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.1e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.232e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.85e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.558e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)6.035e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)6.035e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)4.331e-11
Glyma.07G087500 hypothetical protein AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr07:8093667–8100429 (+)4.125e-11
Glyma.07G089800 hypothetical protein NA 1Chr07:8416943–8421355 (+)5.87e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)3.595e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.379e-12
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)7.811e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.504e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.767e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)9.158e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.554e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.189e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.831e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.831e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)1.145e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.145e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.232e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.232e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.232e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.232e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.297e-11
Glyma.13G193200 hypothetical protein NA 1Chr13:30651373–30661214 (+)8.567e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.643e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.092e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.729e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.8e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.39e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)5.466e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)5.465e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)5.465e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.993e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.788e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.715e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.715e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.715e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.114e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.657e-13
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)6.359e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)1.614e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.797e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.797e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.797e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.797e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.193e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.49e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.859e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.33e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.476e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)6.069e-12
Glyma.19G002200 hypothetical protein NA 1Chr19:144515–146552 (+)9.282e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.033e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.144e-15
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)9.808e-11
Glyma.19G052900 hypothetical protein NA 1Chr19:8583097–8583963 (+)1.416e-11
Glyma.19G053000 hypothetical protein NA 1Chr19:8595506–8596004 (+)1.416e-11
Glyma.19G053200 hypothetical protein AT5G45910:AT5G45910:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr19:8614188–8615729 (-)1.416e-11
Glyma.19G057000 hypothetical protein NA 1Chr19:10403335–10404974 (-)1.416e-11
Glyma.19G060900 hypothetical protein NA 1Chr19:12184420–12191004 (+)1.416e-11
Glyma.19G062200 hypothetical protein NA 1Chr19:13057166–13057974 (-)1.416e-11
Glyma.19G066600 hypothetical protein NA 1Chr19:18168108–18174666 (+)1.416e-11
Glyma.19G066800 hypothetical protein AT5G53430:SDG29:SET domain group 29 1Chr19:18371538–18401257 (+)1.416e-11
Glyma.19G070700 hypothetical protein AT1G70790:AT1G70790:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr19:23598719–23603130 (+)1.416e-11
Glyma.19G073200 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr19:26248452–26264052 (+)1.416e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)3.708e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)3.708e-12