Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10082

Metabolite ID
P10082
Deionized mass
390.0587 Da
Average m/z
391.0660
Average RT
10.3511
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
127
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

127 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 4Chr13:31727841–31735910 (-)3.372e-15
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.045e-13
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)3.095e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.987e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.599e-17
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.758e-14
Glyma.01G018000 hypothetical protein NA 2Chr01:1736217–1737749 (-)3.782e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.2e-12
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)6.818e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)3.13e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.197e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.213e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.248e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)9.736e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.842e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)3.372e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.317e-12
Glyma.16G115500 hypothetical protein NA 2Chr16:25622503–25630816 (+)3.095e-15
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)1.611e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.962e-17
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.987e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.236e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.431e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)8.193e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.405e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.376e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.902e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.062e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.333e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.897e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.157e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.314e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.465e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.361e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.361e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.361e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.511e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.254e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.266e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.858e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.162e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.191e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.191e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.191e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.197e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.197e-13
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)1.004e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.269e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.835e-15
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.269e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.269e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.835e-15
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.517e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.451e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)2.599e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)2.599e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.197e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.197e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.197e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.197e-14
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.508e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.338e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.338e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.695e-14
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)3.073e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.255e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.734e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.361e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.361e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.361e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.361e-15
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.469e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.842e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.469e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.853e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.149e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.663e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.663e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.299e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.43e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.736e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.046e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.664e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.842e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.911e-11
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)9.549e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.072e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)7.494e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.372e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.127e-16
Glyma.13G204000 hypothetical protein AT3G12650:AT3G12650:uncharacterized protein 1Chr13:31799233–31800440 (+)4.928e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)9.994e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.2e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.317e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.833e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.032e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.833e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.832e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.614e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.198e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.588e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.045e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.394e-13
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)8.472e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.484e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.095e-15
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.095e-15
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.095e-15
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)4.88e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.405e-12
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)1.816e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.053e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.758e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.758e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.038e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.079e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.079e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.647e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.994e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.142e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.013e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.262e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.843e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.726e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)4.716e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.066e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)2.427e-11