Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09821

Metabolite ID
P09821
Deionized mass
251.1247 Da
Average m/z
252.1302
Average RT
10.2748
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
144
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

144 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.972e-19
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.362e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.897e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.981e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.596e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)5.436e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)1.217e-15
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 2Chr06:51042976–51045446 (-)8.987e-12
Glyma.08G303400 hypothetical protein NA 2Chr08:42139097–42147365 (+)2.201e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)7.604e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.118e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)5.073e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.523e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.523e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.57e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.484e-14
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)6.972e-19
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)4.312e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.362e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.38e-11
Glyma.20G235300 hypothetical protein AT1G09060:AT1G09060:JmjC domain protein JMJ24 2Chr20:46790436–46798140 (-)2.436e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.157e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)6.706e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.744e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.42e-12
Glyma.03G091100 hypothetical protein NA 1Chr03:27025145–27034862 (-)5.319e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.428e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.306e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.845e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.762e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.304e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.304e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.304e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.779e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.182e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.813e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.222e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.972e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.797e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.215e-17
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.231e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.375e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.375e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.375e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.032e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.032e-14
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)1.237e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.487e-19
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.823e-18
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.487e-19
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.487e-19
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.823e-18
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)8.683e-17
Glyma.06G321600 hypothetical protein AT4G20860:AT4G20860:FAD-binding Berberine family protein 1Chr06:51023725–51025677 (+)1.185e-11
Glyma.06G322100 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51046118–51047447 (-)1.185e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.385e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.555e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.377e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.377e-11
Glyma.07G033200 hypothetical protein AT1G52770:AT1G52770:Phototropic-responsive NPH3 family protein 1Chr07:2603812–2606511 (+)4.82e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.932e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.232e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)4.232e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.126e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.699e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.683e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.959e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.008e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.939e-18
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.939e-18
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)1.381e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.939e-18
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.939e-18
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)6.309e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.348e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.348e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.348e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.228e-19
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)6.309e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.268e-16
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)3.605e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.013e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.286e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.286e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.014e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.014e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.805e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.805e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.467e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.574e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.316e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.316e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.083e-13
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)5.631e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)5.466e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.466e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.523e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.523e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.661e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.159e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.57e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.484e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.402e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.258e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.44e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.258e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.259e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.087e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.83e-14
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)7.671e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)7.018e-12
Glyma.16G050000 hypothetical protein AT5G14040:PHT3;1:phosphate transporter 3;1 1Chr16:4788380–4801207 (+)3.981e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)2.477e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.519e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)6.023e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)4.528e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.699e-13
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)4.312e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.502e-16
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.104e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.019e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.981e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.981e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.589e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.845e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.48e-13
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.019e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.992e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.405e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.762e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.233e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.233e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)7.407e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)7.407e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.879e-12
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)5.352e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.027e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.596e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.508e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.721e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.721e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)1.482e-11
Glyma.20G235000 hypothetical protein NA 1Chr20:46759449–46761441 (+)9.503e-11
Glyma.20G235400 hypothetical protein AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr20:46801199–46803834 (-)2.436e-11