Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06122

Metabolite ID
P06122
Deionized mass
769.2075 Da
Average m/z
770.2110
Average RT
8.9221
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
134
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

134 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.958e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.993e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.061e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.037e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.965e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)7.021e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)3.754e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.606e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.238e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)9.978e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.866e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.255e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.255e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.147e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.958e-15
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.75e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.269e-15
Glyma.16G118200 hypothetical protein NA 2Chr16:26337169–26338323 (+)1.965e-12
Glyma.17G251200 hypothetical protein NA 2Chr17:40605249–40607536 (+)4.324e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.993e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.186e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.255e-13
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)1.413e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.9e-14
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.369e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.279e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.916e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.271e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.032e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.032e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.428e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.146e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.146e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.146e-13
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.598e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.38e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.611e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.515e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.548e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.424e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.844e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.411e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.411e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.411e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.389e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.389e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.005e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.5e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.404e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.5e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.5e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.404e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.626e-14
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)8.026e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)8.026e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.939e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.486e-17
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.092e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.514e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.514e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.721e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.065e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)6.211e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.715e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.312e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.746e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)6.903e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)5.596e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.643e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.2e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.2e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.2e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.2e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.318e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)6.967e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.223e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.637e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.637e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.579e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.886e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.886e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.517e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.576e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.978e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.055e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.044e-13
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)7.511e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)2.514e-13
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)1.049e-11
Glyma.13G053300 hypothetical protein NA 1Chr13:15064460–15069264 (-)8.776e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.242e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.866e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.475e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.475e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.255e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.25e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.25e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.25e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.019e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.211e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.147e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.257e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.862e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.257e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.257e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.693e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.444e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)3.962e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.441e-14
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.061e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.061e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.061e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.061e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.683e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.6e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.545e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.965e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.793e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)4.15e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.67e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.67e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.048e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.048e-12
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)2.203e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.51e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)4.511e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.702e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)7.747e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.799e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.799e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.513e-12
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)6.794e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)4.912e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)9.984e-11