Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04997

Metabolite ID
P04997
Deionized mass
261.1122 Da
Average m/z
262.1191
Average RT
8.5090
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
127
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

127 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)5.565e-12
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)5.818e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.964e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)2.642e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)2.61e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)7.364e-19
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.201e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.969e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)1.612e-14
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)3.985e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.605e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.605e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.605e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.127e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)3.387e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.667e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.227e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.964e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.751e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.05e-13
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)4.437e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.13e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.472e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.815e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.805e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.195e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)9.395e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.121e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.023e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.637e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.612e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.218e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.206e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.206e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.206e-15
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)2.532e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.985e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.358e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.623e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.176e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.866e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.723e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.231e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.231e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.231e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.65e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.65e-12
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)1.264e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.533e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.472e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.533e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.533e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.472e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.658e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.658e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)4.962e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.605e-16
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.863e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.605e-16
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)5.729e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)8.779e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.859e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.934e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.934e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.051e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.087e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.516e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.385e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.813e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.073e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.073e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.073e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.073e-12
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)5.143e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)5.143e-12
Glyma.12G007800 hypothetical protein NA 1Chr12:572469–583974 (+)1.609e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.392e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.392e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.025e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.025e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.547e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.713e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.372e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.127e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.218e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)7.288e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.871e-14
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)2.61e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.54e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.243e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.147e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.667e-12
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)7.166e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.285e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.285e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.285e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.134e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.587e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.089e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.401e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.565e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.386e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.69e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.817e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.818e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.817e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.818e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)7.808e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.792e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)9.171e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.101e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.201e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.201e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.113e-15
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)7.612e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.727e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.739e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.739e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.002e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.002e-15
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.912e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.811e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.5e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)8.501e-12
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)4.306e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.355e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.391e-14