P04949
Metabolite ID
P04949
Deionized mass
393.1632 Da
Average m/z
394.1668
Average RT
8.4856
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.06G305700 | hypothetical protein | AT2G05710:ACO3:aconitase 3 | 4 | Chr06:49451501–49461369 (-) | 5.271e-15 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 1.01e-11 | |
| Glyma.01G126800 | hypothetical protein | NA | 2 | Chr01:43602195–43612710 (+) | 1.367e-11 | |
| Glyma.06G305200 | hypothetical protein | AT3G21690:AT3G21690:MATE efflux family protein | 2 | Chr06:49420013–49426780 (-) | 7.632e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 1.708e-13 | |
| Glyma.13G200200 | hypothetical protein | NA | 2 | Chr13:31385590–31386947 (+) | 8.641e-11 | |
| Glyma.13G201600 | hypothetical protein | NA | 2 | Chr13:31521512–31522992 (+) | 3.689e-12 | |
| Glyma.14G093100 | hypothetical protein | NA | 2 | Chr14:8654730–8655892 (-) | 1.462e-15 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 2 | Chr16:30652378–30659548 (+) | 3.454e-11 | |
| Glyma.01G119600 | SLE3 | AT2G40170:GEA6:Stress induced protein | 1 | Chr01:41172520–41174209 (-) | 8.059e-11 | |
| Glyma.01G120000 | hypothetical protein | NA | 1 | Chr01:41270985–41274854 (+) | 2.683e-13 | |
| Glyma.01G123900 | hypothetical protein | AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr01:42831758–42837350 (+) | 1.149e-11 | |
| Glyma.01G124100 | hypothetical protein | NA | 1 | Chr01:42886229–42892204 (-) | 4.88e-11 | |
| Glyma.01G124800 | hypothetical protein | AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 | 1 | Chr01:43072403–43076304 (+) | 3.224e-11 | |
| Glyma.01G125400 | hypothetical protein | NA | 1 | Chr01:43394231–43404097 (-) | 3.224e-11 | |
| Glyma.01G125500 | hypothetical protein | NA | 1 | Chr01:43398981–43401979 (+) | 3.224e-11 | |
| Glyma.01G126000 | hypothetical protein | AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein | 1 | Chr01:43477322–43480661 (-) | 3.224e-11 | |
| Glyma.01G126300 | hypothetical protein | NA | 1 | Chr01:43513210–43516682 (-) | 3.224e-11 | |
| Glyma.01G126400 | hypothetical protein | NA | 1 | Chr01:43526917–43529405 (-) | 3.224e-11 | |
| Glyma.01G126500 | hypothetical protein | NA | 1 | Chr01:43543307–43549330 (-) | 3.224e-11 | |
| Glyma.01G126900 | hypothetical protein | NA | 1 | Chr01:43632082–43635399 (+) | 1.367e-11 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 9.553e-11 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 3.471e-11 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 5.525e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 5.717e-16 | |
| Glyma.03G124500 | hypothetical protein | NA | 1 | Chr03:33758928–33762195 (+) | 1.197e-15 | |
| Glyma.04G080000 | hypothetical protein | AT5G11490:AT5G11490:adaptin family protein | 1 | Chr04:6724579–6733710 (+) | 3.239e-12 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 2.335e-12 | |
| Glyma.04G104400 | hypothetical protein | NA | 1 | Chr04:9885009–9889282 (+) | 1.631e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 1.675e-12 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 4.313e-12 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 4.313e-12 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 9.418e-13 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 2.452e-12 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 2.452e-12 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 2.452e-12 | |
| Glyma.05G164700 | hypothetical protein | NA | 1 | Chr05:35543931–35549196 (-) | 7.557e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 5.81e-14 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.162e-17 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 3.711e-11 | |
| Glyma.06G073700 | hypothetical protein | AT2G25660:emb2410:embryo defective 2410 | 1 | Chr06:5670056–5689370 (-) | 5.566e-11 | |
| Glyma.06G074700 | hypothetical protein | AT2G25730:AT2G25730:zinc finger FYVE domain protein | 1 | Chr06:5758402–5786537 (-) | 5.566e-11 | |
| Glyma.06G081600 | hypothetical protein | AT5G11490:AT5G11490:adaptin family protein | 1 | Chr06:6273644–6283819 (+) | 1.539e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 8.666e-13 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 8.666e-13 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 8.666e-13 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 1.534e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 1.534e-12 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 1.91e-11 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 1.652e-11 | |
| Glyma.06G130900 | hypothetical protein | AT4G27800:TAP38:thylakoid-associated phosphatase 38 | 1 | Chr06:10753446–10757827 (+) | 2.32e-11 | |
| Glyma.06G301000 | hypothetical protein | NA | 1 | Chr06:49001317–49005605 (+) | 2.048e-12 | |
| Glyma.06G301100 | hypothetical protein | AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr06:49013527–49014231 (+) | 5.989e-11 | |
| Glyma.06G305300 | hypothetical protein | NA | 1 | Chr06:49431590–49435985 (-) | 5.271e-15 | |
| Glyma.06G305600 | hypothetical protein | NA | 1 | Chr06:49446542–49450635 (-) | 5.271e-15 | |
| Glyma.06G313500 | hypothetical protein | NA | 1 | Chr06:50191600–50203098 (-) | 4.915e-12 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 2.667e-14 | |
| Glyma.06G316500 | hypothetical protein | AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein | 1 | Chr06:50531222–50538652 (-) | 6.196e-12 | |
| Glyma.06G317100 | hypothetical protein | AT5G61520:AT5G61520:Major facilitator superfamily protein | 1 | Chr06:50586679–50589765 (+) | 4.451e-11 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 1 | Chr07:1697119–1698666 (+) | 2.817e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 9.039e-14 | |
| Glyma.08G139300 | hypothetical protein | AT2G22125:CSI1:binding protein | 1 | Chr08:10653279–10664544 (-) | 3.352e-11 | |
| Glyma.09G057300 | hypothetical protein | AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein | 1 | Chr09:5164998–5171598 (-) | 2.58e-12 | |
| Glyma.09G057400 | hypothetical protein | AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein | 1 | Chr09:5173554–5193820 (-) | 2.638e-12 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 2.718e-12 | |
| Glyma.09G068800 | hypothetical protein | AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein | 1 | Chr09:6979166–6993110 (-) | 9.755e-11 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 1.648e-12 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 1.741e-16 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 4.868e-15 | |
| Glyma.10G274700 | hypothetical protein | AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein | 1 | Chr10:49769554–49774168 (-) | 3.73e-12 | |
| Glyma.11G070700 | hypothetical protein | NA | 1 | Chr11:5282926–5287258 (+) | 9.957e-12 | |
| Glyma.11G182600 | hypothetical protein | AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 1 | Chr11:24998933–25003549 (-) | 4.899e-14 | |
| Glyma.11G182700 | hypothetical protein | AT1G32250:AT1G32250:Calcium-binding EF-hand family protein | 1 | Chr11:25028353–25031056 (-) | 6.245e-14 | |
| Glyma.11G182800 | hypothetical protein | AT2G27460:AT2G27460:sec23/sec24 transport family protein | 1 | Chr11:25044939–25052549 (+) | 1.306e-11 | |
| Glyma.11G183800 | hypothetical protein | AT5G22450:AT5G22450:spectrin beta chain, brain | 1 | Chr11:25162867–25173439 (-) | 7.688e-11 | |
| Glyma.12G008300 | hypothetical protein | AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 1 | Chr12:613939–617457 (+) | 3.577e-14 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 4.469e-11 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 4.469e-11 | |
| Glyma.12G186200 | hypothetical protein | AT3G44350:NAC061:NAC domain containing protein 61 | 1 | Chr12:34708678–34710549 (+) | 1.092e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 1.443e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.708e-13 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 2.889e-11 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 3.023e-11 | |
| Glyma.13G068200 | hypothetical protein | AT5G14940:AT5G14940:Major facilitator superfamily protein | 1 | Chr13:16825383–16836935 (+) | 7.453e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 1.01e-11 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 1.878e-11 | |
| Glyma.13G318900 | hypothetical protein | AT2G27810:NAT12:nucleobase-ascorbate transporter 12 | 1 | Chr13:41337944–41344534 (+) | 6.308e-13 | |
| Glyma.13G319600 | hypothetical protein | AT5G22740:CSLA02:cellulose synthase-like A02 | 1 | Chr13:41398196–41403950 (-) | 1.005e-15 | |
| Glyma.14G066800 | hypothetical protein | NA | 1 | Chr14:5511222–5513114 (+) | 1.876e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 3.907e-12 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 4.323e-12 | |
| Glyma.14G201600 | hypothetical protein | NA | 1 | Chr14:46703283–46706500 (+) | 8.557e-13 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 8.557e-13 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 1.563e-12 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 6.459e-15 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 1.563e-12 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 1.563e-12 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 3.542e-14 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 3.742e-16 | |
| Glyma.16G050500 | AFB3B | auxin signaling F-box 3 protein | AT3G26810:AFB2:auxin signaling F-box 2 | 1 | Chr16:4853237–4856710 (+) | 7.826e-11 |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 4.594e-13 | |
| Glyma.16G137600 | hypothetical protein | NA | 1 | Chr16:29468438–29472890 (-) | 1.638e-12 | |
| Glyma.16G139000 | hypothetical protein | NA | 1 | Chr16:29623540–29631451 (+) | 3.168e-14 | |
| Glyma.16G139100 | hypothetical protein | NA | 1 | Chr16:29632332–29634248 (-) | 1.157e-11 | |
| Glyma.16G139500 | hypothetical protein | AT5G66550:AT5G66550:Maf-like protein | 1 | Chr16:29686243–29690410 (-) | 1.186e-16 | |
| Glyma.16G140000 | hypothetical protein | AT5G01820:SR1:serine/threonine protein kinase 1 | 1 | Chr16:29738375–29739010 (+) | 6.521e-11 | |
| Glyma.16G142300 | hypothetical protein | AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein | 1 | Chr16:30086178–30091466 (-) | 2.348e-11 | |
| Glyma.16G143400 | hypothetical protein | NA | 1 | Chr16:30337469–30338390 (-) | 9.648e-11 | |
| Glyma.17G211500 | hypothetical protein | AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein | 1 | Chr17:34916813–34922875 (+) | 9.008e-11 | |
| Glyma.17G215500 | KNAT5 | NA | 1 | Chr17:36212363–36217688 (-) | 3.362e-11 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1123637–1130946 (+) | 2.516e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 2.791e-15 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 2.791e-15 | |
| Glyma.19G128200 | hypothetical protein | NA | 1 | Chr19:38739769–38743404 (+) | 2.987e-11 |