SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Gene Associated metabolites Research resources

GENE DETAIL · Glycine max

Glyma.12G202400

Description hypothetical protein

Gene interval Chr12:36289704–36295084 (-), Wm82.a2.v1 · 1-based inclusive

Arabidopsis ortholog AT4G03415:PP2C52:Protein phosphatase 2C family protein

Genome context

Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions

Explore research resources ↓

Associated metabolite features2457Overlap

Maximum supporting SNP records3

Features with ≥2 supporting SNP records576

Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.

Additional descriptive statistic

Mean supporting SNP records per associated feature: 1.2357.

Research resources

Follow this gene identifier to compare annotations, examine protein function and find supporting literature.

SoyBase ↗Gene models and soybean annotations
NCBI Gene ↗Gene records, sequences and cross-references
UniProt ↗Protein function, domains and annotation evidence
PubMed ↗Publications mentioning this identifier

These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.

Compare gene models, expression and reported orthologs

SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗

Arabidopsis IDs in the supplied annotation

AT4G03415NCBI Gene ↗UniProt ↗

Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.

Associated metabolites

Browse associated features and open their GWAS evidence or compound candidates.

2457 matching features · page 43 of 246

Metabolite ID	Candidate annotation	Deionized mass (Da)	Supporting SNP records	Minimum P
P39072	chiglitazar	572.2152	2	3.885e-13
P39157	2-Cyanomethylene-1-glucosyloxy-3-hydroxy-4,5-dimethoxycyclohexane	375.1531	2	2.711e-15
P39184	Cyclopentenyl propionate musk	264.2052	2	3.313e-14
P39191	1,4-Divinylbenzene	130.0766	2	3.62e-14
P39463	3-Methoxy-19-norpregna-1,3,5(10)-trien-20-one	312.2143	2	5.126e-14
P39497	alpha-Zearalenol	320.1584	2	4.673e-15
P39537	5-Megastigmen-7-yne-3,9-diol 9-glucoside	370.1958	2	9.077e-14
P39708	Methyl N-({(2s,3s)-3-[(Propylamino)carbonyl]oxiran-2-Yl}carbonyl)-L-Isoleucyl-L-Prolinate	397.2207	2	2.703e-16
P39722	Pellynol H	510.3657	2	4.664e-14
P39753	No candidate annotation	561.7489	2	2.089e-17