P39537
Metabolite ID
P39537
Deionized mass
370.1958 Da
Average m/z
371.2027
Average RT
19.6067
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.08G122200 | hypothetical protein | NA | 3 | Chr08:9416766–9429995 (-) | 7.088e-12 | |
| Glyma.08G123500 | hypothetical protein | NA | 3 | Chr08:9494946–9505931 (-) | 7.088e-12 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 3.691e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 3 | Chr16:36856833–36863994 (-) | 9.106e-12 | |
| Glyma.16G210200 | hypothetical protein | NA | 3 | Chr16:36933402–36938940 (+) | 5.78e-11 | |
| Glyma.08G122600 | hypothetical protein | NA | 2 | Chr08:9445153–9450502 (+) | 4.382e-11 | |
| Glyma.09G209200 | hypothetical protein | AT1G32160:AT1G32160:beta-casein (DUF760) | 2 | Chr09:43361634–43365478 (-) | 8.401e-14 | |
| Glyma.09G274700 | hypothetical protein | NA | 2 | Chr09:49057465–49065986 (-) | 1.105e-12 | |
| Glyma.09G275800 | hypothetical protein | NA | 2 | Chr09:49116424–49122191 (-) | 1.105e-12 | |
| Glyma.09G276100 | hypothetical protein | AT2G38510:AT2G38510:MATE efflux family protein | 2 | Chr09:49139110–49143810 (-) | 1.105e-12 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 2 | Chr12:36289704–36295084 (-) | 9.077e-14 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 3.42e-13 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 4.343e-13 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 4.343e-13 | |
| Glyma.13G183400 | hypothetical protein | NA | 2 | Chr13:29666942–29670201 (+) | 6.213e-11 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 1.169e-11 | |
| Glyma.18G100200 | hypothetical protein | NA | 2 | Chr18:10512806–10522231 (+) | 3.424e-12 | |
| Glyma.02G006500 | hypothetical protein | AT4G01660:ABC1:ABC transporter 1 | 1 | Chr02:693193–700260 (+) | 8.618e-13 | |
| Glyma.02G044600 | hypothetical protein | NA | 1 | Chr02:4131829–4134877 (+) | 9.103e-13 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 5.729e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 1.658e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 4.124e-11 | |
| Glyma.03G016700 | hypothetical protein | AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr03:1683395–1688893 (-) | 5.031e-11 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 6.749e-11 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 6.668e-12 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 4.24e-15 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 1.306e-11 | |
| Glyma.04G082800 | hypothetical protein | NA | 1 | Chr04:6977997–6983005 (-) | 6.593e-12 | |
| Glyma.04G084300 | hypothetical protein | AT2G25800:AT2G25800:elongation factor Ts (DUF810) | 1 | Chr04:7153009–7158438 (+) | 2.365e-11 | |
| Glyma.04G084800 | hypothetical protein | AT5G11630:NOXY2:uncharacterized protein | 1 | Chr04:7187985–7192897 (+) | 5.812e-11 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 6.425e-11 | |
| Glyma.04G107900 | hypothetical protein | AT3G53990:AT3G53990:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr04:11421366–11422972 (-) | 7.831e-11 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 1 | Chr05:2965889–2971412 (-) | 1.053e-13 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 3.062e-12 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 2.293e-11 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 1.969e-11 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 1.969e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 1.525e-12 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 1.142e-12 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 1.142e-12 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 1.142e-12 | |
| Glyma.05G130700 | hypothetical protein | AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr05:32376592–32384905 (+) | 4.541e-11 | |
| Glyma.05G232400 | hypothetical protein | AT3G24440:VRN5:Fibronectin type III domain-containing protein | 1 | Chr05:40992124–41003814 (+) | 1.322e-11 | |
| Glyma.05G232600 | hypothetical protein | AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… | 1 | Chr05:41009642–41015826 (+) | 1.011e-11 | |
| Glyma.05G232800 | hypothetical protein | AT3G18500:AT3G18500:DNAse I-like superfamily protein | 1 | Chr05:41022747–41030067 (-) | 1.011e-11 | |
| Glyma.05G233100 | hypothetical protein | NA | 1 | Chr05:41041130–41048359 (-) | 1.011e-11 | |
| Glyma.05G233400 | ALMT9 | aluminum-activated malate transporter 9 | AT3G18440:ALMT9:aluminum-activated malate transporter 9 | 1 | Chr05:41058365–41063472 (-) | 1.011e-11 |
| Glyma.05G233500 | hypothetical protein | NA | 1 | Chr05:41066769–41067350 (-) | 4.513e-12 | |
| Glyma.05G233700 | COL11 | zinc finger protein CONSTANS-LIKE 16-like | AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein | 1 | Chr05:41087671–41089500 (+) | 3.299e-11 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.348e-20 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.238e-25 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.12e-11 | |
| Glyma.06G019800 | hypothetical protein | NA | 1 | Chr06:1494230–1501925 (+) | 3.037e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 5.904e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 5.904e-11 | |
| Glyma.06G261900 | hypothetical protein | NA | 1 | Chr06:44875369–44879702 (-) | 1.154e-13 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 8.907e-11 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 8.907e-11 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 8.906e-11 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 7.087e-12 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 7.087e-12 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 7.088e-12 | |
| Glyma.08G210200 | hypothetical protein | NA | 1 | Chr08:17010526–17012557 (+) | 1.973e-12 | |
| Glyma.08G210300 | hypothetical protein | NA | 1 | Chr08:17011623–17012548 (-) | 1.973e-12 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 9.01e-11 | |
| Glyma.09G209500 | hypothetical protein | NA | 1 | Chr09:43388010–43391593 (+) | 4.086e-11 | |
| Glyma.09G209600 | hypothetical protein | AT4G19003:VPS25:E2F/DP family winged-helix DNA-binding domain-containing protein | 1 | Chr09:43392184–43395506 (-) | 4.086e-11 | |
| Glyma.09G209900 | hypothetical protein | AT1G31930:XLG3:extra-large GTP-binding protein 3 | 1 | Chr09:43412726–43419532 (+) | 2.413e-11 | |
| Glyma.09G274900 | hypothetical protein | AT5G02280:AT5G02280:SNARE-like superfamily protein | 1 | Chr09:49069946–49073277 (-) | 1.105e-12 | |
| Glyma.09G275100 | hypothetical protein | AT3G08760:ATSIK:Protein kinase superfamily protein | 1 | Chr09:49079101–49084269 (-) | 1.105e-12 | |
| Glyma.09G275300 | hypothetical protein | NA | 1 | Chr09:49094668–49096996 (-) | 1.105e-12 | |
| Glyma.09G275500 | hypothetical protein | NA | 1 | Chr09:49105837–49106989 (+) | 2.31e-14 | |
| Glyma.09G275900 | hypothetical protein | AT5G01850:AT5G01850:Protein kinase superfamily protein | 1 | Chr09:49128687–49133154 (-) | 1.105e-12 | |
| Glyma.09G276000 | hypothetical protein | NA | 1 | Chr09:49131662–49132187 (+) | 1.105e-12 | |
| Glyma.09G276300 | WNK10 | AT3G51630:WNK5:with no lysine (K) kinase 5 | 1 | Chr09:49161113–49166087 (+) | 2.371e-11 | |
| Glyma.10G265400 | hypothetical protein | AT2G01290:RPI2: | 1 | Chr10:48921268–48922795 (+) | 3.732e-11 | |
| Glyma.11G048300 | hypothetical protein | AT4G37640:ACA2:calcium ATPase 2 | 1 | Chr11:3601241–3607177 (+) | 7.634e-11 | |
| Glyma.11G049700 | hypothetical protein | NA | 1 | Chr11:3731308–3734534 (+) | 1.04e-11 | |
| Glyma.11G050300 | hypothetical protein | AT2G23093:AT2G23093:Major facilitator superfamily protein | 1 | Chr11:3765453–3771565 (+) | 2.402e-11 | |
| Glyma.11G050500 | hypothetical protein | AT5G67370:CGLD27:DUF1230 family protein (DUF1230) | 1 | Chr11:3778152–3782174 (+) | 2.402e-11 | |
| Glyma.11G050600 | hypothetical protein | NA | 1 | Chr11:3779988–3786583 (-) | 2.402e-11 | |
| Glyma.11G051600 | hypothetical protein | NA | 1 | Chr11:3857225–3859564 (-) | 2.402e-11 | |
| Glyma.11G095100 | hypothetical protein | NA | 1 | Chr11:7212438–7214276 (-) | 3.003e-12 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 5.642e-15 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 5.643e-15 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 1.498e-14 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 1.498e-14 | |
| Glyma.12G183400 | hypothetical protein | NA | 1 | Chr12:34427496–34440319 (-) | 9.322e-12 | |
| Glyma.12G183700 | hypothetical protein | AT2G27600:SKD1:AAA-type ATPase family protein | 1 | Chr12:34470517–34477475 (-) | 5.49e-11 | |
| Glyma.12G186200 | hypothetical protein | AT3G44350:NAC061:NAC domain containing protein 61 | 1 | Chr12:34708678–34710549 (+) | 1.237e-11 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 7.108e-13 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 7.108e-13 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 4.211e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 3.42e-13 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 2.951e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 7.749e-11 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 3.691e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 4.343e-13 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 4.343e-13 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.492e-12 | |
| Glyma.13G187100 | hypothetical protein | AT1G02100:SBI1:Leucine carboxyl methyltransferase | 1 | Chr13:30076949–30095359 (-) | 1.753e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 3.663e-11 | |
| Glyma.14G093100 | hypothetical protein | NA | 1 | Chr14:8654730–8655892 (-) | 7.479e-11 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 1.169e-11 | |
| Glyma.14G204400 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr14:46936057–46943868 (-) | 2.166e-11 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 4.32e-13 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 6.494e-13 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 4.32e-13 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 4.32e-13 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 2.401e-11 | |
| Glyma.15G141100 | hypothetical protein | NA | 1 | Chr15:11554310–11555089 (+) | 3.328e-11 | |
| Glyma.16G050500 | AFB3B | auxin signaling F-box 3 protein | AT3G26810:AFB2:auxin signaling F-box 2 | 1 | Chr16:4853237–4856710 (+) | 6.867e-11 |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 3.181e-12 | |
| Glyma.16G209900 | hypothetical protein | NA | 1 | Chr16:36919141–36924601 (+) | 5.78e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 1 | Chr16:36943073–36948828 (+) | 1.876e-12 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 1.876e-12 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 1.403e-11 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 1.403e-11 | |
| Glyma.18G098900 | hypothetical protein | NA | 1 | Chr18:10297476–10305043 (+) | 6.324e-11 | |
| Glyma.18G099000 | hypothetical protein | AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein | 1 | Chr18:10326925–10347143 (-) | 6.324e-11 | |
| Glyma.18G099600 | hypothetical protein | AT4G27040:VPS22:EAP30/Vps36 family protein | 1 | Chr18:10453308–10458891 (-) | 3.424e-12 | |
| Glyma.18G099700 | hypothetical protein | AT5G54860:AT5G54860:Major facilitator superfamily protein | 1 | Chr18:10459970–10464888 (-) | 5.668e-16 | |
| Glyma.18G099900 | hypothetical protein | AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… | 1 | Chr18:10471443–10475076 (+) | 3.424e-12 | |
| Glyma.18G100300 | hypothetical protein | NA | 1 | Chr18:10523838–10534676 (+) | 9.74e-15 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 1.033e-11 | |
| Glyma.20G014300 | PIN3B | auxin efflux carrier component 3b | AT1G70940:PIN3:Auxin efflux carrier family protein | 1 | Chr20:1287080–1292171 (-) | 9.155e-11 |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 3.668e-12 | |
| Glyma.20G019700 | hypothetical protein | NA | 1 | Chr20:2047020–2050862 (-) | 3.684e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 2.426e-14 |