Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39157

Metabolite ID
P39157
Deionized mass
375.1531 Da
Average m/z
376.1603
Average RT
19.4099
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.434e-17
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)1.966e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.229e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)6.123e-18
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.711e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.097e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.978e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.815e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.719e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)6.632e-11
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)1.253e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.345e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.115e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.383e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.383e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)4.519e-12
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)6.766e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.481e-16
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.538e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.435e-18
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.279e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.513e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.42e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.095e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.12e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.743e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.808e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.808e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.068e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.412e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.412e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.412e-15
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)5.447e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)7.954e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.157e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.157e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.157e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.157e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.688e-21
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.565e-19
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.602e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.602e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.288e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.288e-16
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.263e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.263e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.263e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)3.761e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.311e-14
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.15e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.15e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.213e-12
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)8.408e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.072e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.072e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.745e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.693e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.683e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.088e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.297e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.457e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.289e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.289e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.289e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.289e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.241e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.241e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.241e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.056e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.056e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.477e-17
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.477e-17
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)7.527e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.123e-18
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.995e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.389e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.097e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.912e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.978e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.853e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.853e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.853e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.51e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.519e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.519e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.519e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.574e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.588e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.588e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.719e-14
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.825e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.284e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.583e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.314e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.672e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.632e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)8.31e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.713e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.716e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.866e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)6.866e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)1.455e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)1.455e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)1.455e-11
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)1.253e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)1.253e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)1.253e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)1.253e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)9.113e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)6.73e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.585e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.382e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.345e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)4.356e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.856e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.856e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)1.273e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.854e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.854e-16
Glyma.19G118500 hypothetical protein NA 1Chr19:37592389–37594845 (-)2.317e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.172e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.028e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.175e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.073e-12