Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39753

Metabolite ID
P39753
Deionized mass
561.7489 Da
Average m/z
562.7586
Average RT
19.7382
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
106
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

106 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.156e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.765e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.764e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.667e-12
Glyma.04G064500 hypothetical protein NA 2Chr04:5367346–5372857 (+)3.913e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 2Chr05:2965889–2971412 (-)6e-14
Glyma.05G127500 hypothetical protein NA 2Chr05:32041345–32049554 (+)3.16e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.491e-12
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)9.93e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)4.723e-19
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.089e-17
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.295e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.81e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.81e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.677e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.333e-12
Glyma.16G210200 hypothetical protein NA 2Chr16:36933402–36938940 (+)1.33e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.408e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)8.388e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)8.194e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)9.874e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.315e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.881e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.355e-14
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)5.542e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)2.822e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)6.999e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.998e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.906e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.423e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.252e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.252e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.252e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.006e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.67e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.048e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.916e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.912e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.734e-14
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.734e-14
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.734e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.02e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.556e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.556e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.91e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.868e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.358e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.259e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.353e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.259e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.259e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.353e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.156e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.156e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.366e-13
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.406e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)6.746e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)8.579e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.366e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.578e-13
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)4.461e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.053e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.316e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.196e-13
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.961e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.831e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.831e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)2.595e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.723e-19
Glyma.12G202500 hypothetical protein AT1G03600:PSB27:photosystem II family protein 1Chr12:36301835–36304669 (+)8.478e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)5.734e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.575e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.145e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.145e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.945e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)5.059e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.386e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.765e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.81e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.81e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.498e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.411e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.411e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.411e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.085e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)7.239e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)7.239e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)7.239e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.422e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.404e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.263e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.62e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.358e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.592e-11
Glyma.16G172600 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33333664–33344521 (-)5.914e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.392e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.043e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.626e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.626e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.764e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.552e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.185e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.516e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.516e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.548e-11