SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.
GENE DETAIL · Glycine max
Glyma.04G064300
Description Tyrosyl-DNA phosphodiesterase 1
Gene interval Chr04:5351566–5357225 (+), Wm82.a2.v1 · 1-based inclusive
Arabidopsis ortholog AT5G15170:TDP1:tyrosyl-DNA phosphodiesterase-like protein
Genome context
Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions
Explore research resources ↓Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.
Additional descriptive statistic
Mean supporting SNP records per associated feature: 1.
Research resources
Follow this gene identifier to compare annotations, examine protein function and find supporting literature.
- SoyBase ↗Gene models and soybean annotations
- NCBI Gene ↗Gene records, sequences and cross-references
- UniProt ↗Protein function, domains and annotation evidence
- PubMed ↗Publications mentioning this identifier
These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.
Compare gene models, expression and reported orthologs
SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗
Arabidopsis IDs in the supplied annotation
- AT5G15170NCBI Gene ↗UniProt ↗
Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.
Associated metabolites
Browse associated features and open their GWAS evidence or compound candidates.
21 matching features · page 1 of 3
| Metabolite ID | Candidate annotation | Deionized mass (Da) | Supporting SNP records | Minimum P |
|---|---|---|---|---|
| P02046 | 2-Methyl-4'-(methylthio)-2-morpholinopropiophenone | 279.1283 | 1 | 4.577e-11 |
| P03955 | Methylfurfuryl alcohol | 112.0518 | 1 | 8.654e-11 |
| P04426 | Opuntioside I | 318.0923 | 1 | 7.472e-11 |
| P04498 | 3-Methylmuconolactone | 156.0428 | 1 | 1.497e-11 |
| P06565 | N-[(5-{2-[(6R)-2-Amino-4-oxo-3,4,5,6,7,8-hexahydropyrido[2,3-D]pyrimidin-6-YL]ethyl}-2-thienyl)carbonyl]-L-glutamic acid | 449.1443 | 1 | 3.436e-11 |
| P08719 | 3-Methylglutarylcarnitine | 289.1527 | 1 | 8.028e-11 |
| P09497 | 2,5-Dimethylfuran | 96.0575 | 1 | 3.711e-11 |
| P09922 | Voxelotor | 337.1410 | 1 | 1.575e-12 |
| P10799 | No candidate annotation | 757.2029 | 1 | 1.048e-11 |
| P21054 | Isariotin C | 409.2093 | 1 | 3.224e-12 |