Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09922

Metabolite ID
P09922
Deionized mass
337.1410 Da
Average m/z
338.1475
Average RT
10.3010
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
111
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

111 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)3.634e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.545e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.729e-19
Glyma.04G122400 hypothetical protein NA 2Chr04:15651117–15669036 (+)4.867e-11
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)5.366e-13
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.584e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.513e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.034e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.709e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.709e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.458e-11
Glyma.17G212100 hypothetical protein NA 2Chr17:35010757–35014587 (+)1.266e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.057e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.638e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.545e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.656e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.369e-16
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.955e-12
Glyma.04G064300 Tyrosyl-DNA phosphodiesterase 1 AT5G15170:TDP1:tyrosyl-DNA phosphodiesterase-like protein 1Chr04:5351566–5357225 (+)1.575e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.415e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.762e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.057e-15
Glyma.04G122600 hypothetical protein NA 1Chr04:15763721–15773690 (-)4.867e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)5.366e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)6.396e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.07e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.784e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.523e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.152e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.152e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.804e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.426e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.426e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.426e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.007e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.985e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.957e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.095e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.079e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.597e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.229e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.229e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.535e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.535e-16
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.959e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)6.769e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)6.769e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.549e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.865e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.865e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.818e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.548e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.548e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.033e-13
Glyma.08G210800 hypothetical protein AT1G80180:AT1G80180:uncharacterized protein 1Chr08:17028376–17029482 (+)1.199e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.385e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)3.258e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.244e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.318e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)9.842e-12
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.126e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.126e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.126e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.466e-11
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)6.141e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.675e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.675e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.675e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.681e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.79e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.79e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)7.151e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.198e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.198e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.709e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.104e-12
Glyma.13G168300 hypothetical protein AT5G20110:AT5G20110:Dynein light chain type 1 family protein 1Chr13:28265646–28268213 (+)2.77e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.523e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.245e-15
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.267e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.584e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.913e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.584e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.584e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.05e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.458e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.08e-12
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)9.965e-14
Glyma.16G157800 hypothetical protein NA 1Chr16:31832373–31834430 (-)1.594e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.397e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)7.827e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.552e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.267e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.267e-14
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.359e-13
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)1.494e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.9e-13
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)4.004e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)5.785e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.47e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.057e-13
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)3.373e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)6.814e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.961e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.731e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.731e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.561e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.786e-16
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)2.55e-11
Glyma.20G223300 hypothetical protein AT1G09770:CDC5:cell division cycle 5 1Chr20:45791239–45803369 (-)1.434e-11
Glyma.20G225700 hypothetical protein AT1G08790:AT1G08790:1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685) 1Chr20:45982621–45984242 (-)2.916e-12