Overview Annotation GWAS Evidence Associated genes

P55354

Metabolite ID
P55354
Deionized mass
630.2454 Da
Average m/z
631.2535
Average RT
31.7275
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.708e-13
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)8.806e-11
Glyma.20G122600 hypothetical protein AT2G01130:AT2G01130:DEA(D/H)-box RNA helicase family protein 3Chr20:36527607–36546140 (-)8.476e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)4.941e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)3.731e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.812e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.05e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.157e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.295e-11
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)2.842e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 2Chr18:3881382–3884162 (+)8.867e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)9.855e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.979e-12
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)7.272e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.007e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.821e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.553e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.553e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.129e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.189e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.633e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.957e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.782e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.885e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.288e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.01e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.34e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.34e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.865e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.977e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.977e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.977e-15
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.292e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.19e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.718e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.806e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.663e-16
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)4.191e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)9.594e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.513e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.513e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.513e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.861e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.861e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.652e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.642e-13
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.884e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.884e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.656e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.134e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.186e-14
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.73e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.871e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.718e-12
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)3.615e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.008e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.978e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.378e-16
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.449e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.874e-11
Glyma.11G000200 hypothetical protein AT1G76670:AT1G76670:Nucleotide-sugar transporter family protein__AT5G42420:AT5G42420:Nucleotide-sugar transporter famil… 1Chr11:7666–11455 (+)3.929e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)1.568e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)5.45e-13
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)6.054e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)9.841e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)8.591e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)5.385e-17
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.091e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.091e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.703e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.703e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.042e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)8.007e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.426e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.426e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.708e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.769e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.137e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.826e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.576e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.023e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.497e-11
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)2.935e-11
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)3.244e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.835e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.835e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.791e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.898e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.791e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.791e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.394e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.352e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.87e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.303e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.303e-11
Glyma.16G042700 hypothetical protein AT1G08570:ACHT4:atypical CYS HIS rich thioredoxin 4 1Chr16:3982381–3984873 (-)2.675e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.897e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.362e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.821e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.126e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)3.769e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.011e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.368e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.204e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)3.141e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)1.634e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.774e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.774e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.404e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.07e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.043e-12
Glyma.17G099300 hypothetical protein AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein 1Chr17:7838198–7840795 (-)5.668e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)5.943e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)5.943e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)5.943e-11
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)2.842e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)2.842e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)2.842e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)2.842e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)3.257e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)4.144e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.541e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)6.597e-12
Glyma.18G044400 hypothetical protein AT3G03250:UGP1:UDP-GLUCOSE PYROPHOSPHORYLASE 1 1Chr18:3836270–3837813 (+)4.735e-13
Glyma.18G044600 hypothetical protein AT4G10710:SPT16:global transcription factor C 1Chr18:3846050–3851668 (+)1.157e-13
Glyma.18G044700 hypothetical protein NA 1Chr18:3846777–3847566 (+)1.157e-13
Glyma.18G044800 hypothetical protein NA 1Chr18:3854125–3856926 (+)1.157e-13
Glyma.18G045000 hypothetical protein AT5G45130:RHA1:Ras small GTP-binding family protein 1Chr18:3889384–3895138 (-)4.629e-11
Glyma.18G045100 hypothetical protein AT1G65840:PAO4:polyamine oxidase 4 1Chr18:3897921–3904561 (-)4.629e-11
Glyma.18G045600 hypothetical protein NA 1Chr18:3947197–3952541 (+)4.124e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)7.588e-14
Glyma.18G045800 hypothetical protein AT3G02710:AT3G02710:ARM repeat superfamily protein 1Chr18:3960056–3964823 (-)4.124e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)7.414e-12
Glyma.18G274000 hypothetical protein AT5G38895:AT5G38895:RING/U-box superfamily protein 1Chr18:55663429–55669796 (-)5.999e-12
Glyma.18G274100 hypothetical protein AT5G38880:AUG5:HAUS augmin-like complex subunit 1Chr18:55672621–55681964 (+)7.574e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.916e-17
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.4e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)8.806e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)8.806e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)8.806e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)8.806e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.797e-13
Glyma.20G122300 hypothetical protein NA 1Chr20:36506583–36511326 (-)8.476e-11