Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55332

Metabolite ID
P55332
Deionized mass
586.2401 Da
Average m/z
587.2477
Average RT
31.7152
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
98
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

98 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.778e-14
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.296e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.373e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.809e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)4.223e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.72e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.424e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)5.738e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.778e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.211e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.349e-12
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)1.524e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.098e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.092e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)9.221e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.403e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.25e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.434e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.434e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.434e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.434e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.434e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.434e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.434e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.941e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.941e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.619e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.896e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.499e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.478e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.08e-13
Glyma.04G083600 hypothetical protein NA 1Chr04:7048192–7052947 (-)6.511e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.412e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.199e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.708e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.708e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.289e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.446e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.446e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.446e-14
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)2.325e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.116e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.228e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.71e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.006e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.635e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)3.68e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.373e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.373e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.74e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)6.919e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.626e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.312e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.848e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.031e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.603e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.352e-16
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.333e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.333e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.333e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.333e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)3.579e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.285e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.285e-12
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)1.11e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.341e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.542e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.009e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)4.134e-11
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)4.134e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.266e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.933e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.481e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)9.111e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.43e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)2.243e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.758e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.221e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.809e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.809e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.809e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.809e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.015e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)7.111e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.185e-12
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)7.284e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)4.424e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.802e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.435e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.759e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.759e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)3.948e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)3.581e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.199e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.198e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)1.402e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.806e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.896e-11