Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55331

Metabolite ID
P55331
Deionized mass
642.2343 Da
Average m/z
643.2410
Average RT
31.7148
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
113
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

113 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.174e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.573e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.203e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.169e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)6.377e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)4.459e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.265e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.453e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.227e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.427e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.211e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)5.009e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.012e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.012e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.807e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.411e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)9.115e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.008e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.649e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)1.475e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)1.475e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.475e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.131e-15
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.577e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.213e-19
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.213e-19
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.82e-21
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.603e-20
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.603e-20
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.603e-20
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.209e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.451e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.861e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.036e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.159e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.509e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.509e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.509e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.695e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.695e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.938e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.938e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)6.308e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)6.308e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.174e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.174e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.73e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.265e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.265e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.265e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.265e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.226e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.515e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.515e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.815e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.062e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.34e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.429e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.319e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.319e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.82e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.62e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.62e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.62e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.62e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)9.963e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)5.005e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.811e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.811e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.74e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.558e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.227e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.287e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.083e-12
Glyma.13G055200 hypothetical protein AT3G02200:AT3G02200:Proteasome component (PCI) domain protein 1Chr13:15229290–15234025 (-)6.872e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.235e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.235e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.541e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.046e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.541e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.541e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.472e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.902e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)5.182e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.932e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.573e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.573e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.573e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.573e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.804e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.434e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.775e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.169e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.169e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.912e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.781e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.245e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.805e-11
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)4.146e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.246e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.025e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.499e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.278e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.278e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.585e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.585e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)3.576e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.574e-14
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)3.041e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)4.982e-20
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.407e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.149e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.267e-11