P54671
Metabolite ID
P54671
Deionized mass
358.7361 Da
Average m/z
359.7418
Average RT
31.1730
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 6 | Chr19:3335896–3343744 (+) | 2.36e-19 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 3 | Chr13:31727841–31735910 (-) | 1.356e-13 | |
| Glyma.05G149900 | hypothetical protein | NA | 2 | Chr05:34389242–34393621 (-) | 6.26e-13 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 6.225e-16 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 4.424e-17 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 1.481e-11 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 1.481e-11 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 2 | Chr13:31720004–31725252 (+) | 1.356e-13 | |
| Glyma.14G067800 | hypothetical protein | AT3G12380:ARP5:actin-related protein 5 | 2 | Chr14:5675792–5680343 (+) | 4.353e-12 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 2.36e-19 | |
| Glyma.19G029600 | hypothetical protein | NA | 2 | Chr19:3681517–3690884 (-) | 8.143e-13 | |
| Glyma.19G029800 | hypothetical protein | NA | 2 | Chr19:3724518–3729860 (-) | 7.739e-13 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 2 | Chr20:34984922–34988496 (+) | 5.513e-14 | |
| Glyma.01G018000 | hypothetical protein | NA | 1 | Chr01:1736217–1737749 (-) | 4.865e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 1.675e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 1.206e-12 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 5.551e-12 | |
| Glyma.03G209700 | hypothetical protein | NA | 1 | Chr03:41646792–41648527 (+) | 7.445e-13 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 5.182e-12 | |
| Glyma.04G216000 | hypothetical protein | AT3G27740:CARA:carbamoyl phosphate synthetase A | 1 | Chr04:48723367–48726816 (-) | 6.789e-11 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 7.116e-13 | |
| Glyma.05G126400 | hypothetical protein | NA | 1 | Chr05:31961493–31968339 (+) | 3.613e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 9.404e-12 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 5.316e-12 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 5.316e-12 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 1.943e-14 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 3.723e-14 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 3.723e-14 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 3.723e-14 | |
| Glyma.05G149200 | hypothetical protein | NA | 1 | Chr05:34347910–34353885 (-) | 2.437e-12 | |
| Glyma.05G149300 | hypothetical protein | AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein | 1 | Chr05:34357418–34361032 (-) | 8.607e-13 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.763e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 3.743e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 7.635e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 1.469e-11 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 1.469e-11 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 1.469e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 4.323e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 4.323e-12 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 6.47e-11 | |
| Glyma.06G190300 | hypothetical protein | AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) | 1 | Chr06:16709212–16710732 (-) | 7.293e-12 | |
| Glyma.06G317100 | hypothetical protein | AT5G61520:AT5G61520:Major facilitator superfamily protein | 1 | Chr06:50586679–50589765 (+) | 1.268e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 7.373e-13 | |
| Glyma.08G330400 | hypothetical protein | NA | 1 | Chr08:44820327–44823668 (+) | 7.178e-13 | |
| Glyma.08G330500 | hypothetical protein | AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein | 1 | Chr08:44824324–44827127 (-) | 7.178e-13 | |
| Glyma.09G016500 | hypothetical protein | NA | 1 | Chr09:1274652–1276853 (-) | 1.625e-11 | |
| Glyma.09G016800 | hypothetical protein | NA | 1 | Chr09:1300913–1311894 (+) | 3.277e-11 | |
| Glyma.09G018700 | hypothetical protein | NA | 1 | Chr09:1470411–1472672 (-) | 1.535e-11 | |
| Glyma.09G060300 | hypothetical protein | AT5G57140:PAP28:purple acid phosphatase 28 | 1 | Chr09:5609003–5612943 (+) | 5.736e-14 | |
| Glyma.09G060600 | hypothetical protein | AT3G28430:AT3G28430:CLEC16A-like protein | 1 | Chr09:5661672–5675338 (-) | 1.838e-16 | |
| Glyma.09G062900 | hypothetical protein | NA | 1 | Chr09:6004419–6011041 (+) | 7.074e-15 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 1.437e-18 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 2.696e-17 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 1.012e-15 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 1 | Chr09:49863377–49871270 (+) | 4.225e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 1.377e-17 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 1.377e-17 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 3.305e-11 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 3.305e-11 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:36289704–36295084 (-) | 2.563e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 1.729e-15 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 4.424e-17 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 1.689e-14 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 1.232e-16 | |
| Glyma.12G228000 | hypothetical protein | AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein | 1 | Chr12:38789187–38797498 (+) | 2.528e-13 | |
| Glyma.12G228300 | hypothetical protein | AT3G15030:TCP4:TCP family transcription factor 4 | 1 | Chr12:38813527–38816237 (-) | 8.012e-13 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 5.907e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 7.165e-11 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 7.165e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.481e-11 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 5.454e-11 | |
| Glyma.13G203600 | hypothetical protein | AT5G13490:AAC2:ADP/ATP carrier 2 | 1 | Chr13:31753843–31756013 (-) | 3.086e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 1.356e-13 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 4.503e-14 | |
| Glyma.13G204200 | hypothetical protein | NA | 1 | Chr13:31822330–31826011 (+) | 8.013e-11 | |
| Glyma.14G066800 | hypothetical protein | NA | 1 | Chr14:5511222–5513114 (+) | 4.022e-14 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 4.286e-11 | |
| Glyma.14G179000 | hypothetical protein | AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 | 1 | Chr14:44030814–44034325 (+) | 5.002e-11 | |
| Glyma.14G179200 | hypothetical protein | AT4G24380:AT4G24380:dihydrofolate reductase | 1 | Chr14:44060802–44063722 (+) | 5.002e-11 | |
| Glyma.16G057700 | hypothetical protein | AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr16:5656328–5663040 (-) | 1.742e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 8.315e-12 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 5.224e-12 | |
| Glyma.16G146300 | hypothetical protein | NA | 1 | Chr16:30714315–30716624 (+) | 7.382e-11 | |
| Glyma.16G146700 | hypothetical protein | NA | 1 | Chr16:30755899–30759360 (-) | 7.382e-11 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 3.051e-11 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 3.051e-11 | |
| Glyma.17G121800 | hypothetical protein | AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 | 1 | Chr17:9746590–9748712 (+) | 1.979e-13 | |
| Glyma.18G099600 | hypothetical protein | AT4G27040:VPS22:EAP30/Vps36 family protein | 1 | Chr18:10453308–10458891 (-) | 2.706e-11 | |
| Glyma.18G099700 | hypothetical protein | AT5G54860:AT5G54860:Major facilitator superfamily protein | 1 | Chr18:10459970–10464888 (-) | 3.584e-11 | |
| Glyma.18G099900 | hypothetical protein | AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… | 1 | Chr18:10471443–10475076 (+) | 2.706e-11 | |
| Glyma.18G100200 | hypothetical protein | NA | 1 | Chr18:10512806–10522231 (+) | 2.706e-11 | |
| Glyma.19G011600 | hypothetical protein | NA | 1 | Chr19:1111789–1116419 (+) | 1.213e-11 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1123637–1130946 (+) | 1.213e-11 | |
| Glyma.19G011800 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1134716–1143232 (+) | 4.776e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 8.921e-13 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 8.921e-13 | |
| Glyma.19G026900 | hypothetical protein | NA | 1 | Chr19:3331196–3333961 (-) | 1.98e-14 | |
| Glyma.19G027200 | hypothetical protein | AT5G15400:AT5G15400:U-box domain-containing protein | 1 | Chr19:3392784–3401129 (-) | 1.952e-12 | |
| Glyma.19G027700 | hypothetical protein | AT5G15440:EDL1:EID1-like 1 | 1 | Chr19:3471299–3475645 (+) | 2.26e-13 | |
| Glyma.19G028100 | hypothetical protein | AT3G01040:GAUT13:galacturonosyltransferase 13 | 1 | Chr19:3511914–3519141 (+) | 4.163e-11 | |
| Glyma.19G031100 | hypothetical protein | AT3G02170:LNG2:longifolia2 | 1 | Chr19:3839225–3845784 (-) | 1.681e-11 | |
| Glyma.19G032800 | hypothetical protein | NA | 1 | Chr19:4196959–4199265 (-) | 8.396e-11 | |
| Glyma.20G098200 | hypothetical protein | AT1G56345:AT1G56345:Pseudouridine synthase family protein | 1 | Chr20:34140611–34141832 (+) | 4.989e-11 | |
| Glyma.20G098400 | hypothetical protein | AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b | 1 | Chr20:34151918–34155417 (+) | 1.6e-12 | |
| Glyma.20G211500 | hypothetical protein | AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr20:44820994–44827443 (+) | 8.032e-11 |