Overview Annotation GWAS Evidence Associated genes

P54666

Metabolite ID
P54666
Deionized mass
530.1391 Da
Average m/z
531.1460
Average RT
31.1702
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
147
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

147 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.514e-19
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)3.643e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.115e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.682e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.907e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)6.003e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.587e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.684e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)1.243e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.718e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.413e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)9.421e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.514e-19
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.637e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.473e-14
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.644e-11
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)3.569e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.396e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.379e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)9.181e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.752e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.071e-12
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)5.813e-12
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)8.177e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.104e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.144e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.814e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.726e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.726e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.828e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.077e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.077e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.077e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)9.416e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.583e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.405e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.607e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.569e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.985e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.16e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.58e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.58e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.58e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.338e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.338e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.417e-12
Glyma.06G190800 hypothetical protein NA 1Chr06:16760534–16765691 (+)1.951e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.358e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)6.785e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.01e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.235e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.759e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.684e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.684e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.684e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.684e-13
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)6.165e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.176e-15
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.157e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.157e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.842e-18
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.599e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.922e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.717e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.092e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.224e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.232e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.232e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.232e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.232e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.823e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.577e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.549e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)1.448e-12
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)1.162e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)1.196e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)5.297e-12
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)4.791e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)5.078e-11
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)3.255e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)3.255e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.832e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.832e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.634e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.634e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.753e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.099e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.099e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.437e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)8.615e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)8.085e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.781e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.662e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.244e-12
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)3.643e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.243e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.506e-13
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.541e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)7.764e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)7.764e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.032e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.413e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.836e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.836e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.602e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.19e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.322e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)4.554e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.661e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.7e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.271e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.526e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.003e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.843e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.682e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.682e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.379e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.574e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.047e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.638e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.448e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.527e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.527e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)8.604e-13
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)8.604e-13
Glyma.17G007400 hypothetical protein NA 1Chr17:630066–634738 (-)1.264e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.796e-17
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.796e-17
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)3.412e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)6.881e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)6.881e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.252e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.197e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.197e-14
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)8.656e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)4.663e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)7.161e-12
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)7.161e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)9.133e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.261e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.698e-12
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)5.585e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)9.928e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)6.328e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)3.299e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.692e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.503e-13