Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54509

Metabolite ID
P54509
Deionized mass
202.1324 Da
Average m/z
203.1390
Average RT
31.0807
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
117
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

117 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)9.528e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.341e-14
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)6.548e-11
Glyma.08G300400 hypothetical protein AT2G02910:AT2G02910:transmembrane protein (DUF616) 3Chr08:41830891–41843406 (-)1.456e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.604e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.585e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.693e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.693e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.693e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.64e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.669e-18
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.391e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.391e-16
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)2.589e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.341e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.63e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.293e-12
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)6.548e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.742e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)3.74e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)3.74e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)3.74e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.999e-12
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)4.015e-13
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)4.015e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.764e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.021e-13
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.85e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.3e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)4.34e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.826e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.855e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.492e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.805e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.484e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.336e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.118e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.118e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.261e-11
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)7.586e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.415e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.415e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.287e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.481e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.091e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.585e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.585e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.585e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.585e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.91e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)4.6e-11
Glyma.08G300000 hypothetical protein NA 1Chr08:41812728–41812868 (+)1.456e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.592e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.847e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.85e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.373e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.751e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.284e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.283e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.693e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.693e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.693e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.908e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.693e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.693e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.027e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.41e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.441e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.154e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.154e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.962e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.962e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.669e-18
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.456e-16
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.71e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.605e-16
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.605e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.391e-16
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)4.579e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.053e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.053e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.053e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.503e-14
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)6.579e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.28e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.608e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.391e-11
Glyma.14G190800 hypothetical protein NA 1Chr14:45566998–45568488 (-)5.003e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.929e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.93e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.41e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.421e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.808e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.627e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.613e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.613e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)1.412e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.819e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.593e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.032e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)5.531e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.023e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.023e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.386e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.589e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.188e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.589e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.12e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.12e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)9.995e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.692e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.692e-14
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)5.201e-12
Glyma.19G137700 hypothetical protein NA 1Chr19:39904075–39916887 (+)1.959e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.578e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.32e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.488e-11