Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54118

Metabolite ID
P54118
Deionized mass
311.2060 Da
Average m/z
312.2123
Average RT
30.6760
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.425e-16
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.057e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.719e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.891e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.902e-17
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.945e-17
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.425e-16
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.248e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.529e-11
Glyma.02G118700 hypothetical protein AT3G22425:IGPD:imidazoleglycerol-phosphate dehydratase 1Chr02:11694693–11697222 (+)4.302e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.369e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.184e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.791e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.381e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.381e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.871e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.897e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.269e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.249e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.171e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.978e-11
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)7.508e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.878e-13
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)7.692e-12
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)9.186e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.03e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.02e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.52e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.012e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.761e-19
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.889e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.889e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.984e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.413e-11
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)7.847e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.717e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.717e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.777e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.777e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)3.933e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.99e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.53e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.134e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.134e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.134e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.001e-12
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)5.483e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.185e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.698e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.151e-15
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.95e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.487e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.678e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.719e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.719e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.241e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.691e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.236e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)1.306e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.891e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.414e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)6.541e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.9e-11