Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53878

Metabolite ID
P53878
Deionized mass
635.2710 Da
Average m/z
636.2799
Average RT
30.4058
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.793e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.721e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)9.659e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.603e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.284e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.284e-13
Glyma.16G200500 hypothetical protein AT5G51840:AT5G51840:junctophilin-like protein 2Chr16:36163525–36167913 (-)2.665e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.793e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.15e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.345e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.521e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.521e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.238e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.205e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.715e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.594e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)6.834e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.002e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.548e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.305e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.305e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.305e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.721e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.721e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.565e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.085e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.459e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.914e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.656e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.689e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.629e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.629e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.629e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)6.959e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.247e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.247e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.164e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.72e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.132e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.132e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.284e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.284e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.02e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.605e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)7.056e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.197e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.199e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.064e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.466e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.026e-19
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.84e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.84e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.621e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.236e-11
Glyma.16G200400 hypothetical protein NA 1Chr16:36151273–36155406 (+)2.665e-11
Glyma.16G200600 hypothetical protein AT5G51830:AT5G51830:pfkB-like carbohydrate kinase family protein 1Chr16:36173339–36177658 (-)2.665e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.145e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)3.005e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.251e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.766e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.636e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.636e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.679e-12