Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53538

Metabolite ID
P53538
Deionized mass
136.0864 Da
Average m/z
137.0949
Average RT
30.0461
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
91
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

91 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.401e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.256e-19
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.056e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.098e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.212e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.187e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.246e-11
Glyma.13G081100 hypothetical protein NA 2Chr13:18881427–18886462 (-)8.5e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.452e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)7.91e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.181e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.751e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.401e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.081e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.659e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.555e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.55e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.799e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.038e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.562e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.562e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.419e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.989e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.989e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.989e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.039e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.433e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.627e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)8.196e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.931e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.943e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.056e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.056e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.637e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.246e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.246e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.246e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.246e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)6.744e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.089e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.57e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.517e-13
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.307e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.307e-12
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)9.579e-11
Glyma.11G105600 hypothetical protein NA 1Chr11:8021436–8024175 (+)4.244e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.73e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.73e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.941e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.133e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.133e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.777e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.09e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.734e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.601e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.601e-11
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)2.465e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)8.66e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.746e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.524e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.746e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.746e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.392e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.449e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.098e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.098e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.098e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.098e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.367e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.548e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.81e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.187e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.187e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.397e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.358e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.139e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.404e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.455e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.455e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.677e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.909e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.909e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.561e-15
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)7.443e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.305e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.305e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.751e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)2.229e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)1.744e-12
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)7.832e-12
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)7.25e-11