Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52467

Metabolite ID
P52467
Deionized mass
158.0666 Da
Average m/z
159.0735
Average RT
28.6028
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.004e-14
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.072e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.027e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.324e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.471e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.471e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.654e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.004e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.767e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.606e-11
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 2Chr20:34757381–34771672 (+)5.278e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)4.106e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.556e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.469e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.864e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.265e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.691e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.503e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.571e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.062e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.733e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.733e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.733e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.236e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.233e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.099e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.398e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.422e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.964e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.119e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.129e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.48e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.48e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.48e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.129e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.324e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.324e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.324e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.324e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.062e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.433e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.22e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.141e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.092e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.194e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.194e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.194e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.194e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.304e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.311e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)9.485e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)2.204e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.784e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.784e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.007e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.007e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.207e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.207e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.738e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.219e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.219e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.471e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.678e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.83e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.156e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.516e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.156e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.156e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.329e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.799e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.202e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.669e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.669e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.654e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.328e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.328e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)6.631e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)6.745e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.262e-11