Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52404

Metabolite ID
P52404
Deionized mass
879.3783 Da
Average m/z
880.3854
Average RT
28.5895
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.734e-12
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)3.665e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.045e-19
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.148e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.662e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.757e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)3.847e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.849e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.76e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.357e-18
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.763e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.662e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.696e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.388e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)3.87e-12
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)3.87e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.768e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.991e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.674e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.701e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.5e-11
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)8.97e-12
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)8.97e-12
Glyma.04G083600 hypothetical protein NA 1Chr04:7048192–7052947 (-)4.549e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.537e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.796e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.911e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.802e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.833e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.833e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.213e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.199e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.199e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.199e-14
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.867e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.257e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.26e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.218e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.987e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.27e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.015e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.701e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.764e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.764e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.924e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.097e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.924e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.924e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.097e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.033e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.239e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)9.207e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.163e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.849e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.849e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.849e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.849e-13
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)4.985e-12
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)4.985e-12
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)2.532e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.54e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.54e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.408e-15
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.479e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.947e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.373e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.147e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)5.005e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.911e-14
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.911e-14
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)9.103e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.602e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.602e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.602e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.602e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.194e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.194e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)7.757e-13
Glyma.13G055200 hypothetical protein AT3G02200:AT3G02200:Proteasome component (PCI) domain protein 1Chr13:15229290–15234025 (-)3.964e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.409e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.217e-15
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)5.152e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.058e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.058e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.058e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.108e-15
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.511e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.665e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.03e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.734e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.122e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)5.44e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.134e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.665e-17
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.665e-17
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.665e-17
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.665e-17
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.086e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.687e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.724e-14
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)7.471e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.59e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.757e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.757e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.043e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.396e-14
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.841e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.977e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.246e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.379e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)5.361e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.876e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.765e-16
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.058e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.035e-11
Glyma.19G201800 hypothetical protein NA 1Chr19:45885155–45889932 (-)6.887e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)4.574e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.384e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.647e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.986e-14
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.513e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.025e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.223e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)3.483e-11