Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52386

Metabolite ID
P52386
Deionized mass
734.4688 Da
Average m/z
735.4830
Average RT
28.5841
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.936e-13
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 3Chr16:30388030–30390647 (-)2.053e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.502e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)4.812e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.046e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.393e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.393e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.927e-11
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)1.853e-11
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)2.188e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.718e-17
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.61e-22
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.604e-16
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.303e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.935e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.664e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.089e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.089e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.572e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.696e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)7.876e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.997e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)4.179e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.026e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.433e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.628e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.116e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.847e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.805e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.898e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.769e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.942e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.467e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.105e-15
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)9.319e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)9.319e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.6e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.218e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)6.382e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.499e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.499e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.063e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.517e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.394e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.394e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.729e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.433e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.433e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.393e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)8.199e-11
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)1.11e-13
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)1.11e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.112e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.838e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.592e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.129e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.589e-11
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)9.459e-13
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)2.936e-12
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)1.017e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)2.443e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)2.442e-11
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)4.705e-12
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)4.705e-12
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)4.705e-12
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)4.705e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)6.646e-21
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)2.188e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)4.811e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)6.918e-15
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)2.716e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)9.881e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.61e-22
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.603e-16
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.291e-20
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)3.006e-11
Glyma.18G033800 hypothetical protein NA 1Chr18:2600457–2604130 (+)5.297e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.765e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.323e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.323e-12