Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51555

Metabolite ID
P51555
Deionized mass
174.1404 Da
Average m/z
175.1465
Average RT
27.9067
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.512e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.629e-17
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)3.031e-15
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.231e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)5.566e-17
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)4.033e-16
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.572e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.604e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)7.038e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)4.237e-19
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.237e-19
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.237e-19
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.93e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.93e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.93e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.626e-14
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)2.295e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.261e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)6.695e-12
Glyma.17G251200 hypothetical protein NA 2Chr17:40605249–40607536 (+)1.148e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.729e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.857e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.909e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.859e-13
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)5.933e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.06e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.715e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.009e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.595e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.445e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)2.169e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.263e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.656e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.348e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.348e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.837e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.193e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.193e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.193e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.766e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.861e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.752e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.943e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.261e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.261e-14
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)4.192e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)9.715e-13
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)9.715e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)5.857e-14
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.76e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.445e-11
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)5.781e-11
Glyma.06G293700 hypothetical protein AT2G20740:AT2G20740:Tetraspanin family protein 1Chr06:48253149–48265560 (+)7.294e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)3.749e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)3.749e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.728e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.629e-17
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.629e-17
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.089e-14
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)5.611e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.604e-13
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)5.397e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.237e-19
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.186e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.237e-19
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)9.187e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.74e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.523e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.523e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.578e-16
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)3.031e-15
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)3.031e-15
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)8.369e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)8.369e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)8.369e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)7.165e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.682e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.682e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.93e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.93e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.93e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.639e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.93e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.93e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.719e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.554e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.02e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)1.886e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)4.729e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.417e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.7e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)6.767e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)6.767e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.261e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.619e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.401e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.209e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)6.643e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.045e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.722e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.587e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.587e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.307e-14
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)4.486e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.055e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.277e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.231e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.566e-17
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.6e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.6e-13
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)6.92e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.076e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)4.076e-12
Glyma.18G040000 GAI AT1G66350:RGL1:RGA-like 1__AT3G03450:RGL2:RGA-like 2 1Chr18:3278869–3281985 (-)9.332e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)1.212e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)1.212e-11
Glyma.18G206000 hypothetical protein NA 1Chr18:48972350–48976819 (+)4.509e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.126e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.984e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.984e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)5.412e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.498e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.867e-14
Glyma.20G109700 hypothetical protein NA 1Chr20:35206615–35208030 (+)9.392e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.418e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.617e-13
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)7.89e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)2.926e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)3.822e-13