Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51533

Metabolite ID
P51533
Deionized mass
351.2635 Da
Average m/z
352.2702
Average RT
27.8722
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.228e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.057e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.656e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.086e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.381e-13
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)5.259e-12
Glyma.01G164700 hypothetical protein NA 1Chr01:50218315–50222373 (+)1.567e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.686e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.5e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.39e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)1.02e-11
Glyma.03G040300 hypothetical protein NA 1Chr03:5038365–5040358 (+)4.25e-11
Glyma.03G040400 hypothetical protein NA 1Chr03:5050463–5052307 (+)6.888e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)8.617e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.807e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.123e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.627e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.208e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.208e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.208e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.406e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.244e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)3.552e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.378e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.64e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.877e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.821e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.639e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.639e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.639e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.639e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.058e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.188e-13
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)2.949e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)3.534e-15
Glyma.12G018000 hypothetical protein NA 1Chr12:1252709–1256330 (-)2.219e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.159e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.438e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.438e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.762e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.656e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.086e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.6e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.6e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.6e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.634e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.802e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.108e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.688e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.015e-15
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.73e-13
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)7.375e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)5.484e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.48e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.135e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.632e-11