Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51162

Metabolite ID
P51162
Deionized mass
574.3490 Da
Average m/z
575.3552
Average RT
27.4970
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)9.743e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.113e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.409e-14
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.29e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.721e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.95e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)2.597e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 2Chr02:7553127–7557516 (-)5.531e-19
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)1.234e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.331e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.103e-14
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.098e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.609e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.051e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.497e-12
Glyma.16G018000 hypothetical protein NA 2Chr16:1601748–1607341 (-)1.978e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.184e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)7.76e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)3.023e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.473e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.113e-11
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)1.372e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.706e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)7.485e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.493e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.493e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.062e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.062e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)6.097e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.467e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)7.165e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.479e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.37e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.788e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.586e-12
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)7.398e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.453e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.201e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.362e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.362e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.362e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.168e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.481e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.754e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.754e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.208e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.314e-12
Glyma.06G293300 hypothetical protein AT4G28280:LLG3:LORELEI-LIKE-GPI ANCHORED PROTEIN 3 1Chr06:48198132–48201464 (-)2.122e-11
Glyma.06G293700 hypothetical protein AT2G20740:AT2G20740:Tetraspanin family protein 1Chr06:48253149–48265560 (+)3.147e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.12e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.409e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.409e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)6.254e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.812e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.188e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)8.021e-13
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.609e-15
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)1.705e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.508e-13
Glyma.09G038600 hypothetical protein AT5G49360:BXL1:beta-xylosidase 1 1Chr09:3236472–3243191 (+)8.662e-11
Glyma.09G038700 hypothetical protein NA 1Chr09:3245046–3247956 (+)8.663e-11
Glyma.09G038900 hypothetical protein NA 1Chr09:3263227–3268153 (+)8.662e-11
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)6.798e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.497e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.072e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.603e-14
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)4.928e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)5.006e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.862e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.862e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.862e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.862e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.911e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.083e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.102e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)4.764e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)4.764e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)4.764e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.515e-13
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)4.901e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.915e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.04e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.04e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.04e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.04e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.715e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.061e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.061e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.061e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.722e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.934e-15
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)3.603e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.237e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.237e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.294e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.553e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.884e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.884e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.257e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.049e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.29e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.264e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.497e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.772e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.628e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)1.668e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.393e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.285e-12
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)1.704e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)5.451e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.339e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.548e-12
Glyma.17G110600 hypothetical protein AT2G11000:MAK10:MAK10 homologue 1Chr17:8660704–8669300 (+)5.228e-12
Glyma.17G110800 hypothetical protein AT5G35200:AT5G35200:ENTH/ANTH/VHS superfamily protein 1Chr17:8683087–8687855 (+)2.171e-11
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)1.131e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.742e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.473e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.306e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.306e-18
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.694e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.916e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.665e-12