Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50681

Metabolite ID
P50681
Deionized mass
548.2492 Da
Average m/z
549.2558
Average RT
27.0622
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.14e-12
Glyma.08G300400 hypothetical protein AT2G02910:AT2G02910:transmembrane protein (DUF616) 3Chr08:41830891–41843406 (-)8.316e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)9.069e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.931e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.274e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.46e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.14e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.255e-11
Glyma.20G022500 hypothetical protein NA 2Chr20:2342943–2353164 (+)5.269e-15
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.147e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)3.037e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)5.649e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)5.649e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)5.649e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)5.649e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)5.649e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.067e-11
Glyma.03G204100 hypothetical protein AT2G35890:CPK25:calcium-dependent protein kinase 25 1Chr03:41232349–41236699 (+)1.885e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)3.222e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.08e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.022e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.672e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.527e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.156e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.54e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.54e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.069e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)9.741e-11
Glyma.08G300000 hypothetical protein NA 1Chr08:41812728–41812868 (+)8.316e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.449e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.823e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.489e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.481e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.481e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.481e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.481e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.448e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.824e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.203e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)8.887e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)8.574e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.93e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.274e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)1.453e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.235e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.428e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.428e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)1.159e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)1.159e-11
Glyma.17G007400 hypothetical protein NA 1Chr17:630066–634738 (-)6.966e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.802e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.523e-11
Glyma.20G094300 hypothetical protein NA 1Chr20:33753229–33754924 (-)8.69e-11
Glyma.20G094400 hypothetical protein AT5G02270:ABCI20:non-intrinsic ABC protein 9 1Chr20:33754119–33755970 (-)8.69e-11
Glyma.20G094500 hypothetical protein NA 1Chr20:33759417–33761555 (-)8.69e-11